LOC103039549


Basic Information

Item Value
gene id LOC103039549
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 13135270 ~ 13181081 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677223.1
AATGCGGGCGGGGGATCAGCaggtagcagcagcagcagcaggcaggTAGGGAACTGTGTTTAACTGTGCTGAACTGAGTTCAGCTGAAGCTACAAAACAACGGAAAACAACACGAACCCGCTCGAAACGAAGCTCCGCGATGCCGCGGGGGCCGGGAGTTCCGCGGCCGGCCTGAGGAGCAGCTGCTGCGGCTGTGTGTGAGCGAGCGAGCGCTGCGGGGTCCGGGCGCTGAGGCAGCAGAGTAAAGGCAGTTGAGCACCTATAGTCTTGATTCTTTCCATCAGCATGGCTGAGAAGGAGCCGGGCAACCCAGCTCACGCCCTGTTTGACCTCTTTGTGGCGGCCCAAACCTGCAAAGAGGTGCAGCTGAAGTTTGCTGAGCTTTGTCGCCACCTAGAGGTGGACTCCCAGGACTATCGCAACTTCTACAACAAGCTGAAGGAAAGACTGAACTACTGGAAAGCCAAAGATCTCTGGCAGAAGATTGACAGCAGAGCTAACCACTCTGACTACGAGCAGGGCAAACCCTGTGCCAAAACTAAGtgtttagtgCTCGGAGCGGGTCCATGTGGGCTGAGGGTGGCTATAGAGCTGGCTCTGCTGGGAGCGCAGGTAGTCTTATTAGAGAAGAGAACCTCTTTCTCCAGGAACAACGTCCTCCACCTGTGGCCCTACACCATCCGAGACCTGCGCAACCTCGGCGCAAAGAAGTTCTACGGCAAATTCTGTTGCGGCTCTCTTGATCACATCAGTATCCGTCAGCTACAGCTGATTCTGCTGAAGCTGGCTCTGCTGTTGGGGGTGGAAGTTCacacaggagtgagtttcaaaGGCCTGGTGGAGCCTCAAGCCTCAGGAGCTGCAGGCTGGAAGGCATTACTGCACCCAGAGTCTCACCCTGCTGCTGCTTACCAGTTTGATGTCTTTATctctgctggaggaggaagatTCGTACCAGATGGCTTTAAGAGGAAGGAGCTGAGAGGAAAGCTGGCCATCGGGATCACTGCTAACTTTGTAAATCGCCATACTGCCGCCGAGGCCCAGGTCCCAGAGATCAGTGGAGTGGCTCGAATTTACAACCAGAAATTCTTCCAGGAGCTTCATACAGAGAAGGgtattGATCTGGAGAACATTGTCTACTATAAAGATGACACTCACTACTTTGTCATGACTGCCAAGAAGAACAGTCTGTTGAAGAAAGGAGTCATTAAGCAAGACTTTAGCGACGCAGATCAGCTGTTAGCACCGGCTAACGTTAACCAGGAGGCTTTGCTGCAGTATGCGCGTGATGCCGCTCAGTTCTCTACAGGCGGTAAGCTGCCCGATATGGAGTTTGCACTGAACCACGCCGGCCAGCAGGACGTGGCCATGTTTGACTTCACCTGCATGCACCGAGCTGAGAACGCCTCGCtggtgagagagaggaggggcaAGAAACTCCTCATCGGACTGGTGGGAGACTGTCTGGTGGAGCCTTTTTGGCCCCTGGGTACAGGCATAGCACGGGGGTTCCTGGCTGCGTTCGATACAGCGTGGATGGTGAGGAACTGGGGCAAAGGGATGCCTCACCTGCAGGTCTTATCGGAAAGGGAAAGTGTGTACCAGTTGCTCTCACAGACCACGCCTGAGAACACCAGCAAAAACTACAATGCCTACAGCATAGACCCTAGCACCCGCTACCCCAACGTCAACGTGTCCTCCATCAAGCCTAAACAGGTGCAGCATCTGTATGATGAAGACAGTTTggatagcagcagcagcaggcctactaaaaaagGTGCAGATTCTCTGACACGCCTGTCGGACCTGCTGAGCTGGTGTCAGAAACACACAGCCTGGTGTAACCGTGTCCAGGTCAAAGACTTGAGTCAGTCTTGGAAGTCTGGCCTGGCGCTGTGTGCCCTGATCCACCACTTCAGACCCAAACTCATAGATATGTCCAGACTGAAGGAGAAGGATGCTAAGTTCAATAATCAGCTGGCCTTTGACATCCTCCAGAGAGAGTTCGGCATTGAGCCAATTATGTCGGCTAGTGATATGGCCACTAGCAAGGAGATTGACCAGCTGTCTATGGTGCTCTACCTCACCCAGGTCCACAACGCTTTTACTGAGACACCAGTGCCAAAAGATCAGTCCAGCCACaagtcactctctctctccaggacTCGCTCTGCCGTCTTCTTCCTGAACAAGCTCAAACACAACTCCCTCCAGAGGCGCAAGGAGAGTCAGACAACCAAGCGAGAGGAAAGAAGAGACGAAAtgagggaggaagaggagcagaAGAAAGACCCTGTGTCTGAGTTGCCCCCCGCAGAGCCGGGCAGCAGCGAGTGTTACTTCTGCCACCAGCAGCTGTACGTGCTGGAGAGGGGCAGCGCTGAGGGCAAATTCTTCCACCGCAGCTGCTTCACATGCCAGCAGTGTGGCACCACCCTGCGCCAGGGAGGATACACCTTCTACCCGGACACTGGGAGGTTCTACTGCGAGCAGCACTCAGAGCCTGTGGCAGAGAAGAGGCAGGAGGAGCGGGAGTCGGAGCCAGCAGATCCCTCCACAGGGGTTCAGGATAATATCCAGCCCAATAAGAATGAACAGCATGGGGATGACCATAAAAAAGGCAAGGAAGAGGAGCACAGTGAAGAGTCTCGGGCGAATGAATCTCCTCAGTCCTTCCGCTCTGTGAAGAGAAAAAGCTCCTATAAGATCTCCATAGACCCTCACTGTGATGAGTCCACAGAATCCGACATCCTTGAGaaacaggaggaggaagacCAGCTCGCAAACAGAGCTGCTAAAGACTCTGATAAGCCTGGAATACCTACAGATCTGAGTACAGAACTTCCCTGTCCTGGTGCTGTTCCTGCTCCAGTGCCCAGCCCACGCAAATCCCGAACCCCCAGTGCTCATTCACCAGTCCCTAAACCACGCACCATCCATAACGTCGTACCCTCCCCCAACCATAGCAAAAAGTGCCCAGAGAAAGACCACACCTCCTCAACGACAGTGCCAACGACAGTGGAAACCATTGCGTCTGGTGATcataaagatgataaagaagaagaagaagcagaagcgcTGGAACAGACCGAGAACGGCCATCATCCTCTTGGCCCATCAGACCCCAGACCCAAGCTGTCTCTTAAAAAGCTGCAGCTCACGGACGAAGAGAAGACCCAGCTGGTGAATCTGAGCTTCAGCCAGGACTCGGACTCTGAGACGCCGGCATCCTCATCTGCCGCTTCTACTTCTTCCTCCAACAAGCCCAACGATGGAGGCGAGGAGGAGGGCTACTGGAGCGGAGGAGCGTCGTCGCTGAGTCACGTCCGAGAGAAGAAGAATCGCCGCTGCTTCAGAAGGAAGGGAGAGCCCCAGAAACCTGCTCAGATCCAGCAGGGCAGGCTCAGGTCCAAGTTCTCCCCCTGGAATCTGTCCTCTCCTCGGCTACAGCAGCGCTTCAGTGTGTTGCGGCCTGCAGTGCAAGTTCAGCCTGAGTCAGACGATGAGGTGGATGCTGACGGTGTGGATGATgaggacgaggaggaggaggaggaagaagaagaagacaacgAAGAGGCTCTGATGACAGCGGATCATTATTTGGATGGACAGGCTGGATCAGTGAAACTGTCTGCGGCGGAGAAGCAGGAGATGACGAAACTGAGGACTCTGGAGCGAAGAGCGAAGATGAGCGAGCTGCAGCGCTTCCACAAAGCTCAGTCTATCCAGAGGAGGCTGGAGGAGATTGAAGTGACATTTAAGGAGCTAGAGGAGAAAGGCGTAGTGCTGGAGAGATCACTCAGAGGAGAGCCTGGCTCTGATGGATCAGCGACTATGATAGACGACTGGATTGAGTTGGTCCAGCAGAAAAATGATCTGGTCTCAGAGGAGTCTGACCTCATGGTGGCGTCTCGTCAGCTGGAACTGGAAGATAAACAGAGcatgctggagctggagctgcggCGCTTCATGGAAATAGACGACTCTGAAAAGACAGAAGCGCAGCAGAAAGAGGAGGAACAAATCCTGCAGCAGATGCTGGAGGTGGTGGATATGAGGAATTCTCTCGTGGCCTTCCTGGAGGAAAAGAGACTCAAAGAGCTGAACGAGGAAACAATGGGCTCCTCGCTGCTGGAGACCAAGCGGCACTCGACCGCATCCGCCCAGGTCCACTGGGCGTGAGAGAGGGGGCGCCACTGTGTACGCACAAACCCACGCAAACACACCGCCTTCTGCCCGCCGGCTGAAATTTATTACATTTCAAACCAAAGACTCTGAAAGGGAAAATCCTGTGAGACTCCGGGACTCATTACTGTGTGCGCGCTTGGACACACTCAGGTTTTCGCGATGTTGGCAGGACGTACGGGGCTTTACACCACCATTCAGACCTGAGGCTACCTATGAACGACACCTCATGATGTTGTCCAGAGAGATCTGGAGCTTCTATTACTAATACCACCCCAGCCTTCACTGCCCTGTCACAGcctagagagaaagaaaacaaagaggtagaaagatagaaatagagagaaagagagagagagagagatgggtggAGTCTCCCTGTTGTAGCTACTGTACACTCCCACGCACACGCAGTCACACGAGTGTGTGAACGAGACATAGATatgtcatatatatttatatatatatatatata

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677223.1 True 4663 mRNA 0.54 25 13135270 13181081

Neighbor

gene id symbol gene type direction distance location
LOC103039239 NA coding upstream 3935 13122853 ~ 13131335 (+)
LOC103038924 src,LOC108425539 coding upstream 11069 13085010 ~ 13124201 (+)
kcng1 kcng1,LOC107711602,LOC107558732,LOC107664154 coding upstream 103938 12990695 ~ 13031332 (+)
LOC111194035 NA coding upstream 193168 12938638 ~ 12942102 (+)
LOC103032933 NA coding upstream 211509 12913488 ~ 12923761 (+)
LOC103033578 LOC108425537,LOC108425536 coding downstream 8647 13189728 ~ 13202439 (+)
LOC103033882 LOC108425536,LOC107697885,LOC107754893 coding downstream 42297 13223378 ~ 13250526 (+)
taf8 taf8,LOC107756368,LOC107549030,LOC107594013,LOC107671856,LOC107723763 coding downstream 80824 13261905 ~ 13276319 (+)
LOC103035899 NA coding downstream 107163 13288244 ~ 13297305 (+)
LOC103038967 dnajc11a,LOC103038967,LOC108433830,LOC108276403,LOC107756372,LOC107701714,LOC107586512,LOC107708818 coding downstream 1377379 14558460 ~ 14571205 (+)
G131697 NA non-coding upstream 8890 13125534 ~ 13126380 (+)
G131715 NA non-coding upstream 35822 13088553 ~ 13099448 (+)
G131694 NA non-coding upstream 41305 13019356 ~ 13093965 (+)
G131675 NA non-coding upstream 234816 12898493 ~ 12900454 (+)
G131652 NA non-coding upstream 506654 12627732 ~ 12628616 (+)
G131667 NA non-coding downstream 7219 13188300 ~ 13189172 (+)
G131728 NA non-coding downstream 26052 13207133 ~ 13209162 (+)
G131729 NA non-coding downstream 43257 13224338 ~ 13225100 (+)
G131730 NA non-coding downstream 47180 13228261 ~ 13266666 (+)
G131735 NA non-coding downstream 87477 13268558 ~ 13271410 (+)
G131677 NA other upstream 194423 12913491 ~ 12940847 (+)
sall4 sall4 other upstream 371560 12689154 ~ 12763710 (+)
LOC103031050 NA other upstream 801180 12240696 ~ 12334090 (+)
LOC111194085 LOC108425553 other upstream 1156509 11922340 ~ 11978761 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 1632547 11491563 ~ 11502723 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 1986927 15168008 ~ 15172897 (+)
G132146 LOC106581475 other downstream 2058999 15240080 ~ 15240397 (+)
fam131c fam131c other downstream 2183309 15364390 ~ 15397569 (+)
ddost ddost,LOC107673085,LOC107687429 other downstream 2278781 15459862 ~ 15466085 (+)
LOC103031494 NA other downstream 2549816 15730897 ~ 15737781 (+)

Expression


Co-expression Network