LOC103039239


Basic Information

Item Value
gene id LOC103039239
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 13122853 ~ 13131335 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258799.3
ATGTCGGCAGAACTGGGGAAAGTTCTCAGAAGaGGGAACGTCAAAAAAATTCGTCTTCGTCCCACCGTCCCCCCATTTTGGATCCGCAACGTGGACGTGTCCCTGACCGTGCTCGGTTATCAGGACCAGCCCTTCATTTGCCCAGGCGCCGTGGTCTTTCTTTACATGCTGTGCCGCGACACTGTTCCGGCGGACGTGGCCAGCGTGGAGGAGCTGCGGGCGGTGCTCCTCTCCTGCCTGTATGTATCGTACGCGTACATCGGCCACGAGATCAGCTACCCGACACTGCCTTTCATTCTGAAGACCGACAGGCAGACGTTTTGGAGGCGCACCCTGGACATCACCATGCGCATGAGCCAAAAGATGCTGGAGATCAACATCTCGCCACACGTCTTCGCCAAGTTCATTTCTGACCTGGAGAAGAAGACGGATTGTTAATTTctatattttccattttctattttacagGTCGATCagattcgaatcctgttcatgtagcttgctgtCGGCTACTGGAGCTGGctttgagagagcacaattggcctggctctctctgggtgggtacagtagatggcgctctttccctaCTTCACTT

Function

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0042327 positive regulation of phosphorylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258799.3 True 595 mRNA 0.53 2 13122853 13131335

Neighbor

gene id symbol gene type direction distance location
kcng1 kcng1,LOC107711602,LOC107558732,LOC107664154 coding upstream 91521 12990695 ~ 13031332 (+)
LOC111194035 NA coding upstream 180751 12938638 ~ 12942102 (+)
LOC103032933 NA coding upstream 199092 12913488 ~ 12923761 (+)
nfatc2 nfatc2 coding upstream 224417 12842203 ~ 12898436 (+)
atp9a atp9a,LOC106567116 coding upstream 298876 12765311 ~ 12823977 (+)
LOC103039549 NA coding downstream 3935 13135270 ~ 13181081 (+)
LOC103033578 LOC108425537,LOC108425536 coding downstream 58393 13189728 ~ 13202439 (+)
LOC103033882 LOC108425536,LOC107697885,LOC107754893 coding downstream 92043 13223378 ~ 13250526 (+)
taf8 taf8,LOC107756368,LOC107549030,LOC107594013,LOC107671856,LOC107723763 coding downstream 130570 13261905 ~ 13276319 (+)
LOC103035899 NA coding downstream 156909 13288244 ~ 13297305 (+)
G131715 NA non-coding upstream 23405 13088553 ~ 13099448 (+)
G131694 NA non-coding upstream 28888 13019356 ~ 13093965 (+)
G131675 NA non-coding upstream 222399 12898493 ~ 12900454 (+)
G131652 NA non-coding upstream 494237 12627732 ~ 12628616 (+)
G131645 NA non-coding upstream 530095 12588295 ~ 12592758 (+)
G131667 NA non-coding downstream 56965 13188300 ~ 13189172 (+)
G131728 NA non-coding downstream 75798 13207133 ~ 13209162 (+)
G131729 NA non-coding downstream 93003 13224338 ~ 13225100 (+)
G131730 NA non-coding downstream 96926 13228261 ~ 13266666 (+)
G131735 NA non-coding downstream 137223 13268558 ~ 13271410 (+)
G131677 NA other upstream 182006 12913491 ~ 12940847 (+)
sall4 sall4 other upstream 359143 12689154 ~ 12763710 (+)
LOC103031050 NA other upstream 788763 12240696 ~ 12334090 (+)
LOC111194085 LOC108425553 other upstream 1144092 11922340 ~ 11978761 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 1620130 11491563 ~ 11502723 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 2036673 15168008 ~ 15172897 (+)
G132146 LOC106581475 other downstream 2108745 15240080 ~ 15240397 (+)
fam131c fam131c other downstream 2233055 15364390 ~ 15397569 (+)
ddost ddost,LOC107673085,LOC107687429 other downstream 2328527 15459862 ~ 15466085 (+)
LOC103031494 NA other downstream 2599562 15730897 ~ 15737781 (+)

Expression


Co-expression Network