G131730


Basic Information

Item Value
gene id G131730
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 13228261 ~ 13266666 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU178216
tcattagggcccgagcaccgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattagggcccgagcaccgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattattattattattattattatttttatttttaaacttcgCGCCCATTTTTGAGGCCTTTCTGATACTCGAAAACTCTTGAATTTTGGCACAGACATCAAAGCCGGTGAAAAATTTGAAATTTCACAGTTCCTGGGCTTGGGAGTTGAtcaggagctctatagcgcccccaaacgtTGCCAGTGGCCGGGATAAAGTTTGTCCAATgtgcaccaactttggtacGCTCATTGACCTCATTATACCGATCAAGAATCACTTGGATTTATTTGACTCCGCctaacaggaagtcggccattttggcaggaagtcgcaaaa
>TU178217
ttattattattattattatttattattattatttttatttttaaacttcgCGCCCATTTTTGAGGCCTTTCTGATACTCGAAAACTCTTGAATTTTGGCACAGACATCAAAGCCGGTGAAAAATTTGAAATTTCACAGTTCCTGGGCTTGGGAGTTGAtcaggagctctatagcgcccccaaacgtTGCCAGTGGCCGGGATAAAGTTTGTCCAATgtgcaccaactttggtacGCTCATTGACCTCATTATACCGATCAAGAATCACTTGGATTTATTTGACTCCGCctaacaggaagtcggccattttggcaggaagtcgcaaaa
>TU178218
tcattagggcccgagcaccgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattagggcccgagcaccgaaggcgcaggcgaagcctgcaccggaggtgcaaagccctattgtttttggtccgtttattattattattattattattatttttatttttaaacttcgCGCCCATTTTTGAGGCCTTTCTGATACTCGAAAACTCTTGAATTTTGGCACAGACATCAAAGCCGGTGAAAAATTTGAAATTTCACAGTTCCTGGGCTTGGGAGTTGAtcaggagctctatagcgcccccaaacgtTGCCAGTGGCCGGGATAAAGTTTGTCCAATgtgcaccaactttggtacGCTCATTGACCTCATTATACCGATCAAGAATCACTTGGATTTATTTGACTCCGCctaacaggaagtcggccattttggcaggaagtcgcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178216 True 470 lncRNA 0.47 2 13266122 13266666
TU178217 False 327 lncRNA 0.40 2 13228261 13266666
TU178218 False 470 lncRNA 0.47 2 13266122 13266666

Neighbor

gene id symbol gene type direction distance location
LOC103033578 LOC108425537,LOC108425536 coding upstream 25822 13189728 ~ 13202439 (+)
LOC103039549 NA coding upstream 47180 13135270 ~ 13181081 (+)
LOC103039239 NA coding upstream 96926 13122853 ~ 13131335 (+)
LOC103038924 src,LOC108425539 coding upstream 104060 13085010 ~ 13124201 (+)
kcng1 kcng1,LOC107711602,LOC107558732,LOC107664154 coding upstream 196929 12990695 ~ 13031332 (+)
LOC103035899 NA coding downstream 21578 13288244 ~ 13297305 (+)
LOC103038967 dnajc11a,LOC103038967,LOC108433830,LOC108276403,LOC107756372,LOC107701714,LOC107586512,LOC107708818 coding downstream 1291794 14558460 ~ 14571205 (+)
LOC103039286 LOC108433838 coding downstream 1306642 14573308 ~ 14601283 (+)
LOC103045636 NA coding downstream 1406881 14673547 ~ 14674582 (+)
LOC103045943 LOC108432535 coding downstream 1423688 14690354 ~ 14702988 (+)
G131729 NA non-coding upstream 3161 13224338 ~ 13225100 (+)
G131728 NA non-coding upstream 19099 13207133 ~ 13209162 (+)
G131667 NA non-coding upstream 39089 13188300 ~ 13189172 (+)
G131697 NA non-coding upstream 101881 13125534 ~ 13126380 (+)
G131715 NA non-coding upstream 128813 13088553 ~ 13099448 (+)
G131735 NA non-coding downstream 1892 13268558 ~ 13271410 (+)
G131738 NA non-coding downstream 22240 13288906 ~ 13290256 (+)
LOC111194091 NA non-coding downstream 464799 13731465 ~ 13734059 (+)
G131895 NA non-coding downstream 515219 13781885 ~ 13793200 (+)
G131925 NA non-coding downstream 694125 13960791 ~ 13961293 (+)
G131677 NA other upstream 287414 12913491 ~ 12940847 (+)
sall4 sall4 other upstream 464551 12689154 ~ 12763710 (+)
LOC103031050 NA other upstream 894171 12240696 ~ 12334090 (+)
LOC111194085 LOC108425553 other upstream 1249500 11922340 ~ 11978761 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 1725538 11491563 ~ 11502723 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 1901342 15168008 ~ 15172897 (+)
G132146 LOC106581475 other downstream 1973414 15240080 ~ 15240397 (+)
fam131c fam131c other downstream 2097724 15364390 ~ 15397569 (+)
ddost ddost,LOC107673085,LOC107687429 other downstream 2193196 15459862 ~ 15466085 (+)
LOC103031494 NA other downstream 2464231 15730897 ~ 15737781 (+)

Expression


Co-expression Network