G131715


Basic Information

Item Value
gene id G131715
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 13088553 ~ 13099448 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU178186
gggtgtccaaactacggcccgctggccatttgcggcccgtttccttttttggagcggcccgcgaggtattttagaaatagaatgaaagttggcccgctgttaagcaggtttttataatgtgagattcaaagtttgaacgctaggtgtcagaaacgggccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaattgggccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaa

Function

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase makorin-1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU178186 True 257 lncRNA 0.48 2 13088553 13099448

Neighbor

gene id symbol gene type direction distance location
kcng1 kcng1,LOC107711602,LOC107558732,LOC107664154 coding upstream 57221 12990695 ~ 13031332 (+)
LOC111194035 NA coding upstream 146451 12938638 ~ 12942102 (+)
LOC103032933 NA coding upstream 164792 12913488 ~ 12923761 (+)
nfatc2 nfatc2 coding upstream 190117 12842203 ~ 12898436 (+)
atp9a atp9a,LOC106567116 coding upstream 264576 12765311 ~ 12823977 (+)
LOC103039239 NA coding downstream 23405 13122853 ~ 13131335 (+)
LOC103039549 NA coding downstream 35822 13135270 ~ 13181081 (+)
LOC103033578 LOC108425537,LOC108425536 coding downstream 90280 13189728 ~ 13202439 (+)
LOC103033882 LOC108425536,LOC107697885,LOC107754893 coding downstream 123930 13223378 ~ 13250526 (+)
taf8 taf8,LOC107756368,LOC107549030,LOC107594013,LOC107671856,LOC107723763 coding downstream 162457 13261905 ~ 13276319 (+)
G131675 NA non-coding upstream 188099 12898493 ~ 12900454 (+)
G131652 NA non-coding upstream 459937 12627732 ~ 12628616 (+)
G131645 NA non-coding upstream 495795 12588295 ~ 12592758 (+)
G131595 NA non-coding upstream 674561 12381615 ~ 12413992 (+)
G131527 NA non-coding upstream 998437 12087153 ~ 12090116 (+)
G131697 NA non-coding downstream 26086 13125534 ~ 13126380 (+)
G131667 NA non-coding downstream 88852 13188300 ~ 13189172 (+)
G131728 NA non-coding downstream 107685 13207133 ~ 13209162 (+)
G131729 NA non-coding downstream 124890 13224338 ~ 13225100 (+)
G131730 NA non-coding downstream 128813 13228261 ~ 13266666 (+)
G131677 NA other upstream 147706 12913491 ~ 12940847 (+)
sall4 sall4 other upstream 324843 12689154 ~ 12763710 (+)
LOC103031050 NA other upstream 754463 12240696 ~ 12334090 (+)
LOC111194085 LOC108425553 other upstream 1109792 11922340 ~ 11978761 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 1585830 11491563 ~ 11502723 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 2068560 15168008 ~ 15172897 (+)
G132146 LOC106581475 other downstream 2140632 15240080 ~ 15240397 (+)
fam131c fam131c other downstream 2264942 15364390 ~ 15397569 (+)
ddost ddost,LOC107673085,LOC107687429 other downstream 2360414 15459862 ~ 15466085 (+)
LOC103031494 NA other downstream 2631449 15730897 ~ 15737781 (+)

Expression


Co-expression Network