G131527


Basic Information

Item Value
gene id G131527
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 12087153 ~ 12090116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU177918
gagtgggctggttcgaatcccgatcatgcagcttgccgccAGCTGCCGAAAgccccgagagagagagagagcacataattggccttgctctctttttgGGTGGGTACATGCTAACAGTAGATGCCGCTCTTTCCCTTTATCACTtatagggtgatgtggatcagcaaaaggatgcatctgtgagctgatgtattggtgCGCTTTCCTCCAATGCTGCATCATGTGttggagaaggcatgtgctagtcttcaccctccttgtgttgtgatatccatcacctgtgatgggggatatacagctgagtagcttttgaatgggtgggacaattgcatagcctagctaaattgggagaaacaAATAAATCTAAGCCAAAACTTTTAGTAGCAGTATATTATTGGTAACCATGGCAAGAGGAGGTTATACTACAGATATAATATAGTtgaaatattacatatatactaCTGTACTATACACCTACCAGCAGCATTTGTATTCTGTATTAGCATCTAAAAGGTTAGCTAACAGCAGGTCTGCTGTTTGGAAAGAAAGTTTGGGTGGAGGATCATGCCTCTAACCCTGCCTCTTGCCCTGCCTCTTATTGAAGACTTGATATATGGTACATAAGCTACAGGTAGATGGTATTTATAAGGTTATATATGTACCCTACATCAATGTAGGGACGTCTTCGCACCCCTACATTACCCCATCTCCTCCTTATAATTCTCGTCTTTCCTTCCCAAAAAATTAGCATTGGTCAAATCGCTAGCTCCTAGTTTCCACTCCTTATTAGCAGCAGTGACAAagcataaaacacagtggatcaacaccagcagatgttgcacatgtctctccataaaaccatcactgatcatcagtatattttactaaattgtatttgtaaatcaagggagcagaggctggaggaagagtggagagacacacagttgtccaaactgctcaaggtctagtgtgaacttcttgtgtattgctatcttggcaatagaaAACATAGATGCACCACTGATTAATAAATGAGCTGCTTGCGCACCCTTACAGTGtgtactgtgaaaaaaaaaaagagaccactcaaaaattatgggttttttcattttaacaaattaaaacctctggactgaactgcttaaagtttggaaccaggagtaaagcagcataaagttttacaaaagcataaaagtacctttactttgctaaaattctactcaagtaaaagtaaaagtacccatctaaaaatctactcgagtaaaagtaaaaaaagtactcaatttaaaatttactttgagtaaaagttagatagttacttttaattatttgatgtaaaaaagtaaaaacaaataataaattacatttttttattattccacatAAGTATAAAACTGTATaggtttctatcatccatttttttttctttactattaaaaagttatggtcatatatgtgactataaactgtaattttatagttttacagttttacccattgctctgctttaactgctatttacatgttttgaaagctgacagctctgtccggcggggcacattactttgtatttttttgcccccatcattttattttttactcagtaattgggagttttccaatgtagcaaagtaaattacttgtgtcaaaatgtatttgagtaaaagtaaaattacctattttaaaaaactactttaaaaacgacaaatctactcaattacagtaacttaagtaaatgtaattcattactttccagcTCTGTGTTTAGGTCTAGATAATATTGAATGCCTGCTCCTCTTGAATGGAGAGACGGTAATGTATCTGCCAGGCATCATAAAGATCTGCGGGGAGATGTTTAGCAGTTCTGACTGAGAATGAGGAGCTGAATGAAGTGCTTTGCTTCATTTACTATGATATTGATTTGTGGTCAGAGCTGATGGATCATAGAAAGGAATGATATCGAAGTTTTACCGTCCGTTTGGCAAAGCGTCAGGCTGTCTGTTGGAAAGCTGACAAATGGTCCTGAATGTTATATGAGCTGAAGACAGACTGAAGAACGACTAATAATAGTTCTCAGCCTGGAAAGCTCAAGTTCTGACCGGTGGGAgcgtgcactgaaaaaaatgatgcgtaaaaagAACTTTAACAATTTttcaactttctgcatttgctttttttttaagtaaatttaatttcaga

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0030537 larval behavior biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177918 True 2199 lncRNA 0.37 3 12087153 12090116

Neighbor

gene id symbol gene type direction distance location
cbln4 cbln4,LOC106567122 coding upstream 924 12068852 ~ 12086229 (+)
LOC111194087 LOC108275500,LOC108425482 coding upstream 34046 11996106 ~ 12053107 (+)
LOC103037687 NA coding upstream 92341 11992242 ~ 11994812 (+)
LOC103036846 LOC103036846,LOC108425493 coding upstream 116307 11968781 ~ 11970846 (+)
LOC103045529 LOC108425554 coding upstream 178030 11806800 ~ 11909123 (+)
znf217 NA coding downstream 209918 12300034 ~ 12317378 (+)
zfp64 NA coding downstream 581511 12671627 ~ 12678080 (+)
atp9a atp9a,LOC106567116 coding downstream 675195 12765311 ~ 12823977 (+)
nfatc2 nfatc2 coding downstream 752087 12842203 ~ 12898436 (+)
LOC103032933 NA coding downstream 823372 12913488 ~ 12923761 (+)
G131531 NA non-coding upstream 36782 12049346 ~ 12050371 (+)
G131380 NA non-coding upstream 294067 11784607 ~ 11793086 (+)
G131367 NA non-coding upstream 296896 11719732 ~ 11790257 (+)
G131370 NA non-coding upstream 331421 11754565 ~ 11755732 (+)
G131361 NA non-coding upstream 407324 11676379 ~ 11679829 (+)
G131595 NA non-coding downstream 291499 12381615 ~ 12413992 (+)
G131645 NA non-coding downstream 498179 12588295 ~ 12592758 (+)
G131652 NA non-coding downstream 537616 12627732 ~ 12628616 (+)
G131675 NA non-coding downstream 808377 12898493 ~ 12900454 (+)
G131694 NA non-coding downstream 929240 13019356 ~ 13093965 (+)
LOC111194085 LOC108425553 other upstream 108392 11922340 ~ 11978761 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 584430 11491563 ~ 11502723 (+)
LOC107197146 NA other upstream 1257595 10815860 ~ 10829558 (+)
LOC103038829 NA other upstream 2158920 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 2166158 9911307 ~ 9920995 (+)
LOC103031050 NA other downstream 150580 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 599038 12689154 ~ 12763710 (+)
G131677 NA other downstream 823375 12913491 ~ 12940847 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 3077892 15168008 ~ 15172897 (+)
G132146 LOC106581475 other downstream 3149964 15240080 ~ 15240397 (+)

Expression


Co-expression Network