G131380


Basic Information

Item Value
gene id G131380
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11784607 ~ 11793086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU177722
CCAAGACTGATCCTCAAAGACTCTCACATTGGCCTTCAAATCCTTGAAAACAGCAACAGCCAGGCGttccttctcctctcctctcgcaTTAATGTGTGCTCAAGTCCTAGACCAAACACAGTgatctactctctctctctctttcagacaaacacacactcacacactcacacagcgtCAGATACAGCAAGTGTGTTGCTGTAACAAACACTCACTGACTGAGGGAAGGCAGAACTTCACTTTCTGAGtcgctcactcactccctccctccctccctgccAGCCCACTCATTCTTCCAGCAGCTCCAACCACTAATCCATCCCACCTACTCCATCTAATTACCGATCAGCTGAACGGGGTGGCCTGTAGGTgaaaacagcaaataaagctgtatacgtACCTGGAAAAGTGGAGTAAGACACTAGAATATCACTGGGCGTGGGTAGAGTGGCCCTGGCATCAATTTCATCAGATAAGCTGAGCGAATCGCTACTGGACGATGTGGGAATGGCGTCTGGCTGGTCATCAATTCCCCCTGCAAGGGGCTGCACCTCATCTGGAGACACTTCAAAACCAATATCCCTCTGATCTGCCACACAAAACATACCACAAGCtgtctctctatacttcatcttcagtgtgccaagtcctgctggaaaatgaaatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177722 True 721 lncRNA 0.48 3 11784607 11793086

Neighbor

gene id symbol gene type direction distance location
LOC103033689 avpr2,LOC106567019 coding upstream 42577 11708353 ~ 11742030 (+)
LOC103033368 LOC108425561,LOC108276129,LOC107593912,LOC107673097,LOC107737522,LOC107591068,LOC107716150 coding upstream 118673 11651509 ~ 11665934 (+)
LOC103032800 lrp1,LOC108425568,LOC107593902,LOC107673053 coding upstream 421256 11185748 ~ 11363351 (+)
LOC103046525 LOC108425571 coding upstream 656687 11115529 ~ 11127920 (+)
fitm2 NA coding upstream 670643 11110370 ~ 11113964 (+)
LOC103045529 LOC108425554 coding downstream 13714 11806800 ~ 11909123 (+)
LOC103036846 LOC103036846,LOC108425493 coding downstream 175695 11968781 ~ 11970846 (+)
LOC103037687 NA coding downstream 199156 11992242 ~ 11994812 (+)
LOC111194087 LOC108275500,LOC108425482 coding downstream 203020 11996106 ~ 12053107 (+)
cbln4 cbln4,LOC106567122 coding downstream 275766 12068852 ~ 12086229 (+)
G131370 NA non-coding upstream 28875 11754565 ~ 11755732 (+)
G131361 NA non-coding upstream 104778 11676379 ~ 11679829 (+)
G131357 NA non-coding upstream 137502 11646460 ~ 11647105 (+)
G131351 NA non-coding upstream 149370 11632509 ~ 11635237 (+)
G131350 NA non-coding upstream 153788 11630032 ~ 11630819 (+)
G131531 NA non-coding downstream 256260 12049346 ~ 12050371 (+)
G131527 NA non-coding downstream 294067 12087153 ~ 12090116 (+)
G131595 NA non-coding downstream 588529 12381615 ~ 12413992 (+)
G131645 NA non-coding downstream 795209 12588295 ~ 12592758 (+)
G131652 NA non-coding downstream 834646 12627732 ~ 12628616 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 281884 11491563 ~ 11502723 (+)
LOC107197146 NA other upstream 955049 10815860 ~ 10829558 (+)
LOC103038829 NA other upstream 1856374 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 1863612 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 1912835 9856406 ~ 9871772 (+)
LOC111194085 LOC108425553 other downstream 129254 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 447610 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 896068 12689154 ~ 12763710 (+)
G131677 NA other downstream 1120405 12913491 ~ 12940847 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 3374922 15168008 ~ 15172897 (+)

Expression


Co-expression Network