LOC111194075 (tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552)


Basic Information

Item Value
gene id LOC111194075
gene name tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9856406 ~ 9871772 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176943
AATGGAATTTTAGTActcctctccctcttcctctccctcacCCTCAATGGAGTCAACTCCGACCTCCTCGTAATCTTTTTCCAGGGCAGCCATGTCCTCTCTGGCCTCGGAGAACTCTCCCTCCTCCATACCCTCACCAACATACCAGTGCACGAAGGCACGCTTGGCGTACATCAGATCAAACTTGTGATCCAGACGAGCCCAGGCCTCAGCGATGGCTGTGGTGTTGCTCAGCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTCCACCTGGAACCACGGTGGGGGGCTGGTAGTTGATGCCCACCTTAAAACCAGTGGGACACCAGTCTACAAACTGAATGGTGCGCTTGGTCTTGATGGTGGGCATCAACTACCAGCCCCCCACCGTGGTTCCAGGTGGAGACCTGGCCAAGGTGCAGAGGGCCGTGTGCATGCTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTCGTCTGGATCACAAGTTTGATCTGATGTACGCCAAGCGTGCCTTCGTGCACTGGTATGTTGGTGAGGGTATGGAGGAGGGAGAGTTCTCCGAGGCCAGAGAGGACATGGCTGCCCTGGAAAAAGATTACGAGGAGGTCGGAGTTGACTCTATTGAGGgtgagggagaggaagagggagaggag
>XR_002650874.1
TCCCGTGAATAAAGACTGACTGTCAACATAACAGACATTCCTCCGCttccgctgctgctgctttgaTCTCGCCGCTATTGTTTCCGCTTTCTAGGAATAATGCGTGAGTGCATCTCTATCCACGTGGGTCAGGCTGGAGTCCAGATTGGCAATGCCTGCTGGGAGCTTTACTGTCTGGAACACGGCATCCAGCCGGACGGGCAGATGCCCAGCGACAAGACCATTGGAGGTGGAGACGATTCCTTCAACACCTTCTTCAGTGAGACTGGAGCTGGAAAGCACGTCCCCAGAGCTGTGTTTGTAGATCTGGAGCCCACTGTTATAGATGAGGTCCGGACTGGAACATACCGCCAGCTGTTCCACCCTGAGCAGCTCATCACAGGAAAGGAGGATGCTGCCAACAACTACGCTCGTGGTCACTACACCATTGGCAAGGAAATCATTGATCTGGTGTTGGACAGGGTCCGCAAACTTTCTGACCAGTGCACAGGCCTCCAGGGTTTCCTGGTGTTCCACAGCTTTGGTGGTGGTACCGGCTCTGGTTTCACCTCCCTGCTGATGGAGCGCCTGTCCGTTGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCCAGGTGTCCACTGCTGTAGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTCGAGCACTCCGACTGTGCCTTCATGGTGGACAATGAGGCCATCTATGATATTTGTCGTAGGAACCTTGATATCGAGCGCCCCTCCTACACCAACCTGAACAGGCTCATTAGTCAGATCGTGTCCTCCATCACTGCCTCCCTCCGTTTTGACGGTGCCCTCAATGTCGATCTTACTGAGTTCCAGACTAACTTGGTGCCCTACCCCCGTATCCACTTCCCACTGGCTACCTATGCCCCAGTGATCTCTGCAGAGAAGGCTTACCATGAGCAGCTCTCTGTGTCTGAGATCACCAACGCCTGCTTCGAGCCGGCCAATCAGATGGTGAAGTGTGATCCACGTCACGGAAAGTACATGGCCTGCTGCCTCCTGTACCGTGGTGACGTGGTGCCCAAAGACGTGAACGCTGCTATTGCCACCCTCAAGACAAGCCGCACATTACCAGTTTTTTGTGGACTGGTGTCCCACTGGTTTTAAGGTGGGCATCAACTACCAGCCCCCCACCGTGGTTCCAGGTGGAGACCTGGCCAAGGTGCAGAGGGCCGTGTGCATGCTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTCGTCTGGATCACAAGTTTGATCTGATGTACGCCAAGCGTGCCTTCGTGCACTGGTATGTTGGTGAGGGTATGGAGGAGGGAGAGTTCTCCGAGGCCAGAGAGGACATGGCTGCCCTGGAAAAAGATTACGAGGAGGTCGGAGTTGACTCTATTGAGGgtgagggagaggaagagggagaggagTATTAGAGTATTAGATCAGCTTGTGTTTAGGGGAATAAAAAGGGAAACGAAAGCGTTAGAATAGTATTTTACACACGATATTCCTGACGAATCAAGTCTACTTCAGAAGGTGAGAAGCAAATTATGAAGTTGTAAGAATTTTTGAAACGTGAATTAATAAAGTTGTTGACGTTTTGGatta

Function

symbol description
tuba1b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in several structures, including ectoderm; integument; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human TUBA1B (tubulin alpha 1b).

NR:

description
tubulin alpha-1C chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176943 False 658 TUCP 0.57 2 9856406 9871591
XR_002650874.1 True 1634 misc_RNA 0.53 4 9868088 9871772

Neighbor

gene id symbol gene type direction distance location
LOC103043867 LOC108433414,LOC104967021,LOC106572606 coding upstream 9664 9822632 ~ 9846742 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding upstream 57513 9796191 ~ 9798893 (+)
LOC103044467 LOC108433411,LOC108276259 coding upstream 62990 9774110 ~ 9793416 (+)
LOC111194074 calcoco1a,LOC108433409 coding upstream 210640 9618358 ~ 9645766 (+)
cbx5 cbx5,LOC103047453,LOC107664188,LOC107707003,LOC107714996 coding upstream 523988 9322681 ~ 9332418 (+)
LOC103039028 LOC108433422 coding downstream 58063 9929835 ~ 9976607 (+)
c1qtnf12 fam132a,LOC107591142,LOC107687484,LOC107716139,LOC107593919 coding downstream 149993 10021765 ~ 10060015 (+)
LOC103041698 olfml3a,LOC108433368,LOC107716140,LOC107687444,LOC107593917,LOC108276296 coding downstream 236394 10108166 ~ 10115520 (+)
klhl21 klhl21,LOC107687446,LOC107593916,LOC107716146 coding downstream 374806 10246578 ~ 10263598 (+)
nol9 nol9 coding downstream 399998 10271770 ~ 10284418 (+)
G130842 NA non-coding upstream 8206 9819634 ~ 9848200 (+)
G130849 NA non-coding upstream 26986 9829159 ~ 9829420 (+)
G130814 NA non-coding upstream 188304 9665520 ~ 9668102 (+)
G130811 NA non-coding upstream 200046 9655387 ~ 9656360 (+)
G130807 NA non-coding upstream 207464 9646274 ~ 9648942 (+)
G130864 kansl2,LOC107591080,LOC107737532,LOC107716132,LOC107687436,LOC107593923 non-coding downstream 6536 9878308 ~ 9879577 (+)
G130855 NA non-coding downstream 74438 9946210 ~ 9978596 (+)
G130854 NA non-coding downstream 107083 9978855 ~ 9981835 (+)
G130856 NA non-coding downstream 109226 9980998 ~ 10042081 (+)
G130884 NA non-coding downstream 135247 10007019 ~ 10012404 (+)
G130844 NA other upstream 99055 9756952 ~ 9757351 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 534326 9306154 ~ 9322080 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other upstream 662628 9132575 ~ 9193778 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other upstream 736624 9117170 ~ 9119782 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other upstream 985577 8853689 ~ 8870829 (+)
mlh3 mlh3,LOC107591079 other downstream 39535 9911307 ~ 9920995 (+)
LOC103038829 NA other downstream 51209 9922981 ~ 9928233 (+)
LOC107197146 NA other downstream 944088 10815860 ~ 10829558 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 1619791 11491563 ~ 11502723 (+)
LOC111194085 LOC108425553 other downstream 2050568 11922340 ~ 11978761 (+)

Expression


Co-expression Network