LOC103024807 (LOC108435578,LOC107565318,LOC107701248)


Basic Information

Item Value
gene id LOC103024807
gene name LOC108435578,LOC107565318,LOC107701248
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 8853689 ~ 8870829 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176443
TCCGCGCTGATCAACAGCAGAAACACggagaaaaaaagttcatttattACCCAAAAAACACCGGTTTCAGCTAGAATGGAGAGACTGTTCATCTGAGAGAACTTTTACAGGAGTTTAATGGATTTATTTTCAGCAGTGCTGGACTCCACCTGATACTATGGCTCTGCTGAGGATTAGGAGCAGTTTCTCGCTGTATCCAgctttactgctgctgttttaCCATAATAGCAAACAGCCAGCTGTCGAGCTGAAGTGCATCATGGTCTAGCTCCTCCCACCTGCCCGCAGTATGATGGCGTCTGTGGTCTCGTTTGGCACCAGGACCCGGGCCCTGAACCTGAAGGGTGTGGATCCAGAGACCTGCATGATCGTCTTTAAAAACCACTGGGCTCaggttttgcGGATTCTGGAGAAGCACGATCCGGCGCGCAGTAACGGGGGGGCGGGACTCCCCCCCTGCCGGCTGGGCCCGATCCCCGGGGACGAGGCGAGCGCGGTTCAGAACTATGTGGAGCACATGCTGTTCCTGCTGATGGAGGAGGAGTCCGGCACGGGCGGAGCCATGGGCCCCATCCTGGAGTTTGTGGTGGTGGAGAACGTAATGGAGAAGCTGTTTCTCTGGAGTCTGCGGCGCGAGTTCACGGACGATATGAAGCTGGAGCAGC
>XM_022677030.1
GGAGCTCCGCGCTGATCAACAGCAGAAACACggagaaaaaaagttcatttattACCCAAAAAACACCGGTTTCAGCTAGAATGGAGAGACTGTTCATCTGAGAGAACTTTTACAGGAGTTTAATGGATTTATTTTCAGCAGTGCTGGACTCCACCTGATACTATGGCTCTGCTGAGGATTAGGAGCAGTTTCTCGCTGTATCCAgctttactgctgctgttttaCCATAATAGCAAACAGCCAGCTGTCGAGCTGAAGTGCATCATGGTCTAGCTCCTCCCACCTGCCCGCAGTATGATGGCGTCTGTGGTCTCGTTTGGCACCAGGACCCGGGCCCTGAACCTGAAGGGTGTGGATCCAGAGACCTGCATGATCGTCTTTAAAAACCACTGGGCTCaggttttgcGGATTCTGGAGAAGCACGATCCGGCGCGCAGTAACGGGGGGGCGGGACTCCCCCCCTGCCGGCTGGGCCCGATCCCCGGGGACGAGGCGAGCGCGGTTCAGAACTATGTGGAGCACATGCTGTTCCTGCTGATGGAGGAGGAGTCCGGCACGGGCGGAGCCATGGGCCCCATCCTGGAGTTTGTGGTGGTGGAGAACGTAATGGAGAAGCTGTTTCTCTGGAGTCTGCGGCGCGAGTTCACGGACGATATGAAGCTGGAGCAGCTGCGCATGTACGAGATGCTGGTGGCTCAGTCTCGCCAACCGCTGCTGCACCACAAGCCCATCCTCAAGCCCCTCATGATGGTGCTGTCCGCCTGCTCCGGCCCCTGCGCCCTGGGGCCCTCCTGCGCCCTGGGGCCCAGCAGGAGCTCCGCGATGGGCCCCGCGGGCCCCGCGGTGGAGGTGGAGCTGGTGCGGCTGCTGCATCAGCTGTGCCTGGTCCTGGCGCGGGACGCCTCCGTCCTGGAGCTCTTCTTCCACAGCAGTCAGGATCAGGGAGCCGCCAACTTCCTGCTCTTCTCCCTGCTGGTGCCCTTCGTCCACCGGGACGGCCCCGTGGGGGTGCAGGCCAGGGACGCTCTCACGCTCATCATGGCTCTGTCGGCACGCAACGCCGTCGTGGCCAATCACATCGCCCAGAACACGTACTTCTGCCCGgttctGGCTACAGGTCTGAGTGGTCTGTACTCTTGGCTCCCGGCGAAGTTAGAGGTGTACAGTGAGGGATGGCACTGTTTAGAGCGAGCTGATTGGATGCAGGTTCCCGCCCTCGTCCAGTTCCTCAACTCTCTACACTTCTGTAGCACTGTGTGCAaggTGGCCCACCCCTCCATCAGAGATCAGCTGCTGGGTTACATCTATAACGGCTTCCTGGTGCCGGTCATGGCTCCTGCTTTACATAAGCTGACTCTGGAGGAAGTGATGACGACGACAGCGTATCTGGAGCTGTTTTTGCGGAGTATCAGTGACCCCGCCCTCCTCCAGAccttcctcatcttcatcctcaGACATCGCCATGACAACGTGAACATCCTGGACACCCTGGTCAGCAGAATCAACACGCCCTTTCAGttaggtACAGTTTCTCTGGCTCTGTTCCGCACTCTGATTGGTCTGTACTGTGAGGATGTTATGCTGCAGCTCATTCTCAGGTATCTGATTCCCTGCACTCACCTGTTGTCCAGCGAGAGAcgtaaactgagagagagagactgctaCTCATCCGTCGCTGCTGCACTCCTCCATCTCACTCCATCCTTCTTCATCTCCAAACCCTGCCCCTCACCCACTCTGCCCCCTAAACCAGACTACATCCTCTGGTCAAAGGTCACCGAAGGGCTGCTGAAGGGGAATATGGggCTTGAGGATCTTTTCTCCGGTGGGGACAATGCAGCACACTCGCGTTTGACGAACCCAGAGCCCTTGATGGACAAGAACTACCTCCAGTACCTGAGCGACGCACGCAGCATCATCAACACCAGCGTCCAGGCCTGTAGGACATGGTCTGCACCTTATAATGGACTGAACCCTACACCTGAGGAATACTGTGGGGAGGAGGAGATAGACGAGCGAGGGATGGAAAAAGCGAAAGACGTAGAGATAGATGCTCCACCTCTGGAGACTCCTCCCCCTCAGCCCCCGACTCCACAGCCTCCCTCTGAAACCAGTTCAATATGCGAGCGAGAGAGGGGCGGGACTCTACTGGAGTTAGAATGGGACGATACTTTCGACGTTGCTCCGGAATCAGAGGAAAACCAGCAGATACAGGAGAATTCCCACATAGCGGAGCACTCgatcccggacgagcccccgAAACACATTCAGGAGATGAGGAAGAGCGCCATCATGCTGATCCGCGGGTCCTACATAGAAGAGTCCGACTTCCAAGATGACGTCTTAGTTTACAGTCTAATCGCACAGAAAGACGCTAAAGACGACAGAAGAGCTTCCTTCAAAACGACTCAACGAAACCAGAATCACAACCGCTCACGCAGCCACGTACGAACCgaaaccaacaacaacaacaacagcgtGCAGCTCCACACGTACAGCAACACGCACAACCACCTACACAACCACCTACAAAACCACATGAACATCATCAACCACGCACGCAACCTCATCAACCACCCTAAACCTGGAACGGAGTGTCTTCTGGAGTCCAGAAACAGTGGAAAAGCACTCGAGAGTTTTTTAGAATCAAGCAACAATATAAAGAACCTGGAATCTATAGAATCTGTACAGATATTAAATGGACATGTCTCTGAGGAAGAGTTCATCCACCTGGACAATAAAACCATCTCACAGGAGCAGGACACACTCCTCAAAACCTCCGGAGATGACTTCATTTCCCAGTGTCTCCAGCTGATCCGCACTTTAGGAGGAGATGAAGAGAGTATAGTAGAAGATGAAGTTCATTTCCAGAGATTAACCACGCTGCTGCACGGCGAGGAAGAGGAGGTGgactttaattcattttataatgATTATGAAGAAGAGGATGAGGATAAAGCTCCTGATGGAAAGAACCATGGCGTCCCATTTACAGGACCGTTCATTAGTGTTCTGCTGTCTCGTCTGGAGAACATGCTGGAGAACTCTGTGGAGGTGAATCTGCTGGTGACGGGGATTCTGGCGCAGATGGCGTCATATCCACAACCTCTACTGCGCTGCTTCCTCCTCAGCACACGACCTGCGTTCCAGCCCAGCGTCCGCTCTCTATACCAGGTTCTGGTTTCTGTTGGTTGCCAGATTGAGCAGTATGTAGCGTCCAGGCCGGAGTTTGCTCAGATGGTGAGAGAAGCTGCTCAGTACCTGTTACTCAAAGACCAAGCCCTAAAGGATAGAGAGCGGGATATCCTGCAGGAGAATGGAGTCGGCTGGTTTATGAATGGACATGTTCCTGGACGGCTGCTGAAATCTCTTCCTCCCTGTCCCAAGATTCCTCCTCAGTCCAGGAACAGAGTGTTCGCCATGTTCCTCTACGCTGAGTTCCTCAAAGAGCTGGCAGCCATCGCCCAGGAACACTCCATCATCCCTGACTCGCCCACGGAGGAGTAAAACCTCGGATTTAACATATACATAAACTTTTTACAACGGCACTTTTTCCACTTACAGAGGGGAAAATAGGTATTTCATACACTGACACCTATAACGAATAGAGAGATCTGTAATATTTATCAGAGGTTCACTTCAACTGTGAGAGACAGAatctaaaacaacattttaaaataattaatgtacattttattgCATGAAATTCAGAAACCTGAAACCTACAGGTCAGACGTTTCCTGAAGTTCTTAAACAAGTTTGCACAAACTCTACTCTACAGCAGGGATTTTCGTCCCAATCCTCCATATAGATCTTCTCCAGATTTTGAAGATTTTGGGGATTTTCAGCTTTTTTCACAGACTTTatattgggttcaggtctggagacctTGAAATGCTGCTGTAACATTAAAAGCTGTTGCTGTTAATgtggctgtgtgttttgggtcattgtcatgctggaagatcCAGCCACCACTCATCTTCAATGCTCTTACTGAGGGAAGGAGGTTGTTGGCCAAAATCTTGCAATACATGGCCTCTTTCCACTTTGCAGATAAGTAACCCCACAGTATGAtgcttccacccccatgcttcacagttagGATGGTATTATATGGTATTACCTCTAAACTCAAGCAGGTGCAGTTAATACAGGTAATGAGTGCAGAAGAGGAGGAGCTTCTTAATGACTAAAGAAACAGTAACAGGTCTTATTTCACACagtaaaatgcaaattaattacttaaatatttattatatattttttagattctgTCTGTCACAGATTAAATTGTATCTTTGATCAAATTTCAGATTTCTCCATTCTTTTATAGGTGGAAAAACTagtatcaaatacttatttccccCCCAGATGTGCAGCCTCAGTACAATTATCAtggaaatatatgtttttttttgtagcaacAATCAAATGCaagtgtataaaatgtataaagtgtataaaatgtataagtTAATCCTATTTACACCAGCCAATTAAACCCATCCACTTGGGAGGGGTCAAAATTCAGTTCttttatattctattattttattattttatttgtaaaggaCATTGTTGTTGATTTGTCTTTACTAATGCACTTTTTCTGATCAATATGAAAcaattaatgctgtttttattctgAATCATGGGCATTTCCACATCATTCTCAAAATGTAGCACCTGTgctttaaaaagtaaaggtGCGAAAACGCAACGCCATGAACCAATCACCCCTTCATCACTCTctaacattgttgatttattctataaactacagacaacatttctcccaaattccaaataaaatattctcatttagagca

Function

NR:

description
PREDICTED: protein FAM160A1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176443 False 665 TUCP 0.55 4 8853694 8858670
XM_022677030.1 True 4832 mRNA 0.49 13 8853689 8870829

Neighbor

gene id symbol gene type direction distance location
LOC111194070 LOC108435580,LOC108275533 coding upstream 20283 8816007 ~ 8833406 (+)
LOC103025127 NA coding upstream 40328 8801192 ~ 8813361 (+)
LOC103025429 egr4,LOC108435548,LOC107734701 coding upstream 55489 8794999 ~ 8798200 (+)
LOC103047651 si:ch73-290k24.6,LOC108435581,LOC108275467,LOC106608414,LOC103365252 coding upstream 72632 8775941 ~ 8781057 (+)
LOC103026051 map7 coding upstream 83255 8736022 ~ 8770434 (+)
LOC103046732 NA coding downstream 5442 8876271 ~ 8877553 (+)
ints11 cpsf3l coding downstream 17689 8888518 ~ 8900208 (+)
LOC103023874 acap3,LOC107706985,LOC107664201,LOC107697914,LOC103359731 coding downstream 49852 8920681 ~ 8993088 (+)
ube2j2 ube2j2,LOC108411519,LOC107697915,LOC107706988,LOC107599097,LOC107664234,LOC107593951 coding downstream 122982 8993811 ~ 8998737 (+)
LOC103023558 LOC108433383 coding downstream 131501 9002330 ~ 9017541 (+)
G130476 NA non-coding upstream 14564 8836764 ~ 8839125 (+)
G130461 NA non-coding upstream 17647 8835156 ~ 8836042 (+)
G130470 ppp1r14c,LOC106608352 non-coding upstream 63421 8731706 ~ 8790268 (+)
G130459 NA non-coding upstream 71120 8721807 ~ 8782569 (+)
G130447 NA non-coding upstream 196944 8656307 ~ 8656745 (+)
G130468 NA non-coding downstream 12108 8882937 ~ 8903073 (+)
G130462 NA non-coding downstream 55883 8926712 ~ 9001690 (+)
G130500 NA non-coding downstream 157216 9028045 ~ 9031375 (+)
G130504 LOC108433385 non-coding downstream 171290 9042119 ~ 9044107 (+)
G130505 NA non-coding downstream 173357 9044186 ~ 9044552 (+)
cda LOC108416503,LOC108433378 other upstream 187870 8662743 ~ 8665819 (+)
G130413 NA other upstream 289114 8563650 ~ 8564575 (+)
LOC103037383 LOC103037383,LOC108432529 other upstream 759635 8091731 ~ 8094054 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other upstream 1244806 7601605 ~ 7608883 (+)
G130120 LOC107716234,LOC107681965 other upstream 1364448 7478355 ~ 7489241 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other downstream 246341 9117170 ~ 9119782 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other downstream 261746 9132575 ~ 9193778 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other downstream 435325 9306154 ~ 9322080 (+)
G130844 NA other downstream 886123 9756952 ~ 9757351 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other downstream 985577 9856406 ~ 9871772 (+)

Expression


Co-expression Network