G130120 (LOC107716234,LOC107681965)


Basic Information

Item Value
gene id G130120
gene name LOC107716234,LOC107681965
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 7478355 ~ 7489241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU175967
AAGATACAGTGCTCCTCTTTGATGTGCGCTCCACTCAGAACAATATCCTGCCTTCTCTCTGCATCTGCTTGGCCCACCCGTGTGATTCCGTCTTTGATGTAGTAGAGCAGACATTCCGACATGAGCGGATCCTCGTTCAGGTTAACCAGGTGAGGAGTCTTTTTAGGAGAGAAGACACCGAGAGTTCCCCCGTCCTCCCTGATGGCAACACCCATCTCTGCCAGGAGAGCCTCtCTCTCCATCCGGATGGCCTCAGTCTTCCTCAGCTTCTCCTCCCACGTCTCATTCAGCTCGGCTATAATCTTCTCGGACTCCTTGAGCCTCTCGATGGCCTCTTCTCCGCCGGGAGTGGACATGATGCGCTCCTGGATGCTGGAGACGGACTGCAGGCCAGCCTGGCTGCACAGAGAGCCAGACGACGGCGATGCGGTCAGGCACCCCATCGGCGCTGTGGAGAGATGGCCAGGCCGTTGGTTCTCTGAGGCTAGCAAGTATCTATGCTTATTGTTGTGAATATCTTTCAGGTCTGAGCCACGCAGGAGACGAGGGAAAACAGGACGAGGTGAAAAGAGGAGCAGAAAAATGATGGA

Function

NR:

description
PREDICTED: kinesin-like protein KIF1C isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175967 True 590 TUCP 0.55 5 7478355 7489241

Neighbor

gene id symbol gene type direction distance location
pex14 pex14,LOC107681981,LOC107708844,LOC107586529,LOC107716227,LOC107695784 coding upstream 436321 6924949 ~ 7042034 (+)
masp2 masp2 coding upstream 583992 6850087 ~ 6894363 (+)
cort cort,sst3,LOC107708791,LOC107571809,LOC107695747 coding upstream 650626 6825920 ~ 6827729 (+)
srm srm coding upstream 661324 6810624 ~ 6817031 (+)
smc1a smc1a,LOC107586531,LOC107716226,LOC107695786 coding upstream 668987 6787909 ~ 6809368 (+)
aurkaip1 aurkaip1 coding downstream 429768 7919009 ~ 7922636 (+)
LOC103036256 mxra8 coding downstream 434622 7923863 ~ 7946663 (+)
LOC103035729 dvl1,dvl1a,LOC107708824,LOC107570850 coding downstream 460596 7949837 ~ 8019122 (+)
LOC103036568 NA coding downstream 542292 8031533 ~ 8038450 (+)
LOC107197257 NA coding downstream 1015232 8504473 ~ 8514270 (+)
G130101 pgd,LOC107586524 non-coding upstream 36487 7421156 ~ 7441868 (+)
G130100 NA non-coding upstream 57370 7420755 ~ 7420985 (+)
G130017 NA non-coding upstream 59140 7415865 ~ 7419215 (+)
LOC111194061 NA non-coding upstream 77570 7354358 ~ 7400785 (+)
G129970 NA non-coding upstream 578714 6896496 ~ 6899641 (+)
G130128 ube4b non-coding downstream 55189 7544430 ~ 7548494 (+)
G130140 NA non-coding downstream 97867 7587108 ~ 7587307 (+)
G130145 NA non-coding downstream 121577 7610818 ~ 7611247 (+)
G130151 clstn1 non-coding downstream 130325 7619566 ~ 7621237 (+)
G130169 NA non-coding downstream 189225 7678466 ~ 7678826 (+)
G130119 NA other upstream 5397 7468385 ~ 7472958 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other upstream 63277 7408996 ~ 7415078 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other upstream 1876894 5599278 ~ 5601461 (+)
LOC103033446 LOC103033446,LOC107756391 other upstream 3099688 4300199 ~ 4378667 (+)
hmgn3 hmgn3 other upstream 3106474 4353083 ~ 4371881 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other downstream 112364 7601605 ~ 7608883 (+)
LOC103037383 LOC103037383,LOC108432529 other downstream 602490 8091731 ~ 8094054 (+)
G130413 NA other downstream 1074409 8563650 ~ 8564575 (+)
cda LOC108416503,LOC108433378 other downstream 1173502 8662743 ~ 8665819 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other downstream 1364448 8853689 ~ 8870829 (+)

Expression


Co-expression Network