LOC103039794 (RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574)


Basic Information

Item Value
gene id LOC103039794
gene name RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5599278 ~ 5601461 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU175303
CGTTTCCGATCCTCTTGCTTGCCACTCGCGTGAAGATGACTAAGAAAAGGAGGAACGGTGGACGCGCCAAGAAGGGACGTGGACATGTCCAGCCCATCCGCTGCACCAACTGTGCCCGCTGTGTGCCCAAGGACAAGGCCATCAAGAAGTTCGTTATCAGGAATATTGTGGAGGCTGCAGCTGTGAGGGACATCTCTGAGGCCAGCGTGTTTGATGCTTACGTTCTGCCAAAGCTGTACGTTAAGCTTCATTACTGCGTGAGCTGTGCCATTCACAGCAAGGTGGTGAGGAACAGGTCACGAGAGGCAAGGAAGGACCGCACCCCACCTCCTCGATTTAGGCCCAGCGGTGCTGCCCCAAGAGCTCCTCCTAAACCCATGTGATTTGGAAAAGTTCTGtaacttaaataataaacattttttgtttattacatcATTTGTATGTGATTCATTTGA
>XM_007246746.3
GGGACTATTATTTTCTCTACCGGAAGCAGTATTCTCTGATTATATAAACTACGTCAGCCCGTTTCCGATCCTCTTGCTTGCCACTCGCGTGAAGATGACTAAGAAAAGGAGGAACGGTGGACGCGCCAAGAAGGGACGTGGACATGTCCAGCCCATCCGCTGCACCAACTGTGCCCGCTGTGTGCCCAAGGACAAGGCCATCAAGAAGTTCGTTATCAGGAATATTGTGGAGGCTGCAGCTGTGAGGGACATCTCTGAGGCCAGCGTGTTTGATGCTTACGTTCTGCCAAAGCTGTACGTTAAGCTTCATTACTGCGTGAGCTGTGCCATTCACAGCAAGGTGGTGAGGAACAGGTCACGAGAGGCAAGGAAGGACCGCACCCCACCTCCTCGATTTAGGCCCAGCGGTGCTGCCCCAAGAGCTCCTCCTAAACCCATGTGATTTGGAAAAGTTCTGtaacttaaataataaacattttttgtttattaca

Function

symbol description
rps26 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).
rps26l Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit.

NR:

description
40S ribosomal protein S26-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02976 RP-S26e, RPS26; small subunit ribosomal protein S26e

RNA

RNA id representative length rna type GC content exon number start site end site
TU175303 False 455 TUCP 0.50 4 5599337 5601461
XM_007246746.3 True 491 mRNA 0.50 4 5599278 5601438

Neighbor

gene id symbol gene type direction distance location
wnt1 wnt1,LOC107695811,LOC107563635 coding upstream 22545 5564065 ~ 5576733 (+)
LOC111194057 NA coding upstream 364352 5226409 ~ 5234926 (+)
LOC103037977 LOC103037977,LOC108432382,LOC105897308,LOC103368323 coding upstream 693872 4901631 ~ 4905406 (+)
LOC103037656 ptges3,ptges3a,LOC108433158,LOC107745455,LOC107570321,LOC107716195 coding upstream 705810 4887865 ~ 4893468 (+)
rnd1 rnd1,rnd1b,LOC103037018,LOC108275505,LOC107745453,LOC107716191,LOC107668562 coding upstream 765161 4811162 ~ 4834117 (+)
lmbr1l lmbr1l,LOC107708860,LOC107716206,LOC107681941 coding downstream 29250 5630711 ~ 5670898 (+)
dhh dhh coding downstream 82447 5683908 ~ 5694116 (+)
kmt2d kmt2d,LOC108275851 coding downstream 97267 5698728 ~ 5742467 (+)
LOC103043202 arhgef25,LOC108433408,LOC107570569 coding downstream 257461 5858922 ~ 6029268 (+)
LOC103043095 LOC103043095,LOC108433420,LOC108275531,LOC106567041,LOC105013543,LOC103368469 coding downstream 483396 6084857 ~ 6105676 (+)
G129557 NA non-coding upstream 93049 5505187 ~ 5506229 (+)
G129556 NA non-coding upstream 100708 5497836 ~ 5498570 (+)
G129520 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107716075,LOC107563629,LOC107695815 non-coding upstream 104014 5358583 ~ 5495264 (+)
G129545 LOC103038352,LOC108276103,LOC108433267,LOC107745467,LOC107563631,LOC107681974,LOC107716200 non-coding upstream 120503 5476514 ~ 5478775 (+)
G129525 NA non-coding upstream 168648 5384278 ~ 5430630 (+)
G129635 NA non-coding downstream 187668 5789129 ~ 5789424 (+)
LOC111194058 NA non-coding downstream 220867 5822328 ~ 5848340 (+)
G129680 NA non-coding downstream 314358 5915819 ~ 5916257 (+)
G129659 NA non-coding downstream 391068 5992529 ~ 6031132 (+)
G129657 NA non-coding downstream 430844 6032305 ~ 6034712 (+)
LOC103033446 LOC103033446,LOC107756391 other upstream 1220611 4300199 ~ 4378667 (+)
hmgn3 hmgn3 other upstream 1227397 4353083 ~ 4371881 (+)
LOC103028602 NA other upstream 1885717 3684923 ~ 3713561 (+)
LOC103029753 ormdl2,LOC103029753,LOC108276395,LOC107549034 other upstream 1937456 3655323 ~ 3661822 (+)
LOC103033013 NA other upstream 2064082 3516459 ~ 3535196 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other downstream 1807535 7408996 ~ 7415078 (+)
G130119 NA other downstream 1866924 7468385 ~ 7472958 (+)
G130120 LOC107716234,LOC107681965 other downstream 1876894 7478355 ~ 7489241 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other downstream 2000144 7601605 ~ 7608883 (+)
LOC103037383 LOC103037383,LOC108432529 other downstream 2490270 8091731 ~ 8094054 (+)

Expression


Co-expression Network