G129680


Basic Information

Item Value
gene id G129680
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5915819 ~ 5916257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU175389
gccaatcttcattaattgcacattgcaccagtaagagcagagtgtgaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatcgaaaaaacataaaaccacggctgcacaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattgtggtctaaaaccaggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175389 True 259 lncRNA 0.45 2 5915819 5916257

Neighbor

gene id symbol gene type direction distance location
kmt2d kmt2d,LOC108275851 coding upstream 173352 5698728 ~ 5742467 (+)
dhh dhh coding upstream 221703 5683908 ~ 5694116 (+)
lmbr1l lmbr1l,LOC107708860,LOC107716206,LOC107681941 coding upstream 244921 5630711 ~ 5670898 (+)
wnt1 wnt1,LOC107695811,LOC107563635 coding upstream 339086 5564065 ~ 5576733 (+)
LOC111194057 NA coding upstream 680893 5226409 ~ 5234926 (+)
LOC103043095 LOC103043095,LOC108433420,LOC108275531,LOC106567041,LOC105013543,LOC103368469 coding downstream 168600 6084857 ~ 6105676 (+)
LOC103043397 LOC108433435,LOC107708852 coding downstream 243004 6159261 ~ 6192019 (+)
LOC111194016 LOC108432442 coding downstream 532828 6449085 ~ 6455180 (+)
LOC103044924 zgc:153867,myl6,LOC107586536,LOC105897346,LOC107570608,LOC105013534,LOC103044924,LOC108433460,LOC106565518,LOC106567035 coding downstream 591305 6507562 ~ 6522363 (+)
huwe1 huwe1,LOC107586534 coding downstream 675347 6591604 ~ 6637739 (+)
LOC111194058 NA non-coding upstream 67479 5822328 ~ 5848340 (+)
G129635 NA non-coding upstream 126395 5789129 ~ 5789424 (+)
G129557 NA non-coding upstream 409590 5505187 ~ 5506229 (+)
G129556 NA non-coding upstream 417249 5497836 ~ 5498570 (+)
G129545 LOC103038352,LOC108276103,LOC108433267,LOC107745467,LOC107563631,LOC107681974,LOC107716200 non-coding upstream 437044 5476514 ~ 5478775 (+)
G129659 NA non-coding downstream 76272 5992529 ~ 6031132 (+)
G129657 NA non-coding downstream 116048 6032305 ~ 6034712 (+)
G129809 NA non-coding downstream 199579 6115836 ~ 6126359 (+)
G129849 NA non-coding downstream 317191 6233448 ~ 6233741 (+)
LOC103044413 NA non-coding downstream 317939 6234196 ~ 6243566 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other upstream 314358 5599278 ~ 5601461 (+)
LOC103033446 LOC103033446,LOC107756391 other upstream 1537152 4300199 ~ 4378667 (+)
hmgn3 hmgn3 other upstream 1543938 4353083 ~ 4371881 (+)
LOC103028602 NA other upstream 2202258 3684923 ~ 3713561 (+)
LOC103029753 ormdl2,LOC103029753,LOC108276395,LOC107549034 other upstream 2253997 3655323 ~ 3661822 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other downstream 1492739 7408996 ~ 7415078 (+)
G130119 NA other downstream 1552128 7468385 ~ 7472958 (+)
G130120 LOC107716234,LOC107681965 other downstream 1562098 7478355 ~ 7489241 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other downstream 1685348 7601605 ~ 7608883 (+)
LOC103037383 LOC103037383,LOC108432529 other downstream 2175474 8091731 ~ 8094054 (+)

Expression


Co-expression Network