G130119


Basic Information

Item Value
gene id G130119
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 7468385 ~ 7472958 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU175966
GTTgcctttctttatttcagtcattgaTTGAGATTTAAAATCAACCACAGCGTGACACAGCCTTCTCAAGTAAACCAGCAAAATCATGTGAACACCAAAATTCATAGTTTgcacaaaacactgattttttgtttCAGAAAAAGCAACATGTTACACAGCCATTTGGAGGCACTTAATATCACCATTgcatataaacactgaacagactgaaatctgactgttcatttttaaaaagaacaatatACATTGTCCGTTTCACTTTGTACAATATCCTCAGCTGTCCTTGTTCTAGCTGGAGTTGCGGTCAGCACTGTACACGTTCAACGCAACATTCCCTATTGGAGGAGAGGAACCGTGTGATCTCTGATAGTCATTTATGGCATTAAAACGGCAACAACAAGGTCTCACTGACGAGCGGCAGATCCAACGTGCAGCAATTTTCAAGCacttctctttaaaaaaaatgctacattGGAAGATGATTGAGCAAGAGAatttaaacattacatatatttttttgttttctctttttctttaattttcttaataTCGCTCAGGCATCACATACAGATAAGGCCTTTCCTATTTCCCAGCACACTGAACAATTCAAGCTCTATAGCAAAGTCAGGTGAGATTCTGTTTCTCCAGGACACTTACTGAGCAGATAGGAAGCATGTGATCTGCAGACACACAGCATGTGTGCTGTGCAAATGAAGCAAACATAGCAAATGAACCAATTACATAACCatattaaggcaaaaaaaaagaaaaaaaaaacagtggcttGGCAGTTACGATAAACAGCAGCATCATTCTGATTGGGATTCTGCTCAAAGGAGGAGCAGGAGAAACTGGAGGCTATGCACCAACATGGGAGCTGCACTCTCAGTTGCATCATATATAGAAATTAATAACAAACACAGGAGGGAAAAGAGTTAGACTGAGATTTGATAAATGAAAGAACACAGCACTGATTtgtctttcattgttttttttttcaataaacaaaaagaaaatgcataGAAATGCTCTTCACTATCGCTCTTCTCTAAAAATGAGGAAAGCACCACAGGAAACCATTGCAACTGCCCTGTAGGACACCTCCAGCTCGAGAAGGTTCTGCTGGCTGGGTTCACTGTGCACATATTTGGGCCACCAGAAAACAAATGTGATTCTAAATCATGCAGTGTTTGTGTCTAGAGATGGGCAAAGGGTTCTATTTTCAGGCTATTTCTAAGAGAGGATCGTTCTAGACCACTGCCTCCATCCCCGTGGGAACTGAATGCCCCCCTGCATTGAGGTTCAGAGTGCAGCAGACATTGGAGAGGAACAATAGAAGCAAAGCGCACAGCAAAGCAGACTCCCATTTGCAGTGCTGCAGTTTTCTCTGAAAACACTGCTAAACTGTCTAACTCGCcgcaggaaagaaagaaagagcagaaCTTTATGGTAAAAGATTAATTGCTAAGCTATTTACAAACTAAAAAGGGCAGAAATACAACTCTAATTAATtgcttcttttttaaaaaaacattttactgcacTAATGCTACAGTATCTCTGAAAAACTACATTACctacatatttcatattagcATAAAAATAGGCAAGAGCAGAAAGAGGCTAACCTTAATGGTTAGTAAGATATGGGCGACCCAATAAGGcactttttttaaccatttttctttctttctattttccaAAATACTTTGTAAGAACACTTTACGTAAGGCTTAACTTGACTTAAAAGATCAAGGCCTTTTACAAATCCACAGTACATTCAAATTCTTCCTTTATTCACTAAATGTGAAAATCTAAatcaaaatgaaacaaaatgtaaGATGACCCATAAAGATTTTTAACTGAAACTTTCTTCACTATGCAGAAAACCAGAACAACATTGGCTGCACTTGTGGAACTCTTCAAGTTCAAGGGCTAACACATATCCAGGTAGGTAATTTGAATTATATACCTTTGACCCAAGTTATTCCAGCATTCCTTGGATGTCATGTTTCAGTTGAATATGTTCTACATAAATATGACTGAAATGCAGATGTAGTGCTACTTCCTATTATGAATAAAAATTCAAGTAAGTAAAGACCCCGAGTTTAGGTCATTTATTATCATAGTTTAAACTGTGAGTAGTGGTGGTTGAGTAGTGGTTATATTTAGGATTGCAAATATTATGAGCAAAAACCTTGAATGGAAATACTGTTGAACTGAAGTTCTGAAGAATCTTAATATAATCAAaaatagggatgcaccaaacaGGGATGTACCAAACAATACCGTAAGTCATATTGCAGAGTGTTTATTCTAACATtgggatttgttttttttttagcagcagAAACCATCTCCTGCCCTAGTGGCACTGTGTTTGACTACTGTTGTGTACAATATGGCAGAGAGCCACAAAGGAGAGCTGACAAACAGCAGGTTCAAATGCATTTTTATGCTTAAcataagttaaattaaatgaacacaCACTTAGAATAAGTTATAATTTTAGGTATAATGTGTTTTTCACAGgttttcattatattatttgATCAGTGTTCAGTATTCGGTACTCAACCTTCAGCCAaaggttttattttgttcagtttcgGACAAAGTTTTtaattcagtgcatccctattcATAAATTGTGTTGGGATATTTCAATTATGAGCTGGTGACCTTCAGTAATTTTTCAATTAAGAGTAAATGATTGGTACAAAGACTGACTGGTTCTACAAGTATTCTTATTCCAGTGTGGCATAGAAATCTTCAAAAAGCCCTCCTGATGCTACAGACATTACCAGCCAATTAGGGGACCAAAcataatctaataaaattatCAAAACATACTTTTCTTGGGCAAACTGCTGTAATTTGGAGCATTAAGGACCAATAacacaaaatactgtaaatactgcaaATAAGCCAGATTTCTGGCAGTGTGACCAATGAGGACAAGCTGTCCAATGCTGTGATTTATCTCTGGAAGTCTGTGTGATGTGAACGTAGTGCTATATATACACTTCAGTAGAACAACAGTACGCCTCGCTCCCATCCCATTCACACTGCGGTTTCCCGTCCTCCCTTCAAATTAGGGGCCGACATTTGTCTACGCATGCGGGGTGGAGTTTGAAAGCTGTTGTGGTGGCTAGACTGCAGGTTGTGCGCATGTTGCTGGTGGTAGTTGTAGCTGCCGTCGTTGCTGTAATGATAGGGCTGtgggtgctgctgctgctgttgatgatgatgatggtggtgatgaggaTGAGGGTAAGAATGATGCTGAGGTTGGTTTTGGTTGTAGCGTGGCTGGTAGAAAGCTTGCTGTGGAGGCTGCTGCTTCCTGTCCCCGGAGTTTAGAGACTCCATGGAGCCCGAGGACCTCTGGCTGCTGCTGTTGAAGGAGTTGCTGCGGCCTCTCTCGTGGGGTTGCTTGCTCCTGTGGCCTTGGTTGTGTCTATGGCTCAGGCCTTGCTCTAGATCTTTGCATCTTCGCTGCCCTGATGGGCTGGGAAGAGGAGGGTGGGAAAAGAGAGAAGGCCCTGCCTTCTCCTGAGTGTCCTCTCCCTCTGTaacgtcctcctcctcctgcaccGACTCTTTGGGAACCTTCAACTCGATCACTTGCTCATCAGTGATAATGATGTGCGTGCCAGGACTCCAGGAGTTGCGATGTTTGGGGTTACTCTTGAAAGGGAAGCGAAGCTTACGGTCCTCTGGTGGGATGAAGCGGTGGGGGCCACTCTGCCTGCGGAGTTGCTTGGAAATCTCTTGCTGTTGGAGGTTCTTCAACCGCACCTGCTCCTGCCGCATCCAGCGCATGTGCCCACGCTTGAGAGAGGAATCGTCGCCCGCCATCTTGGATGCTTGCTCATCTGCTTGATCACCTCCTTCAGGTCTGTCCTCGTACGGAGCCTTGCCTTCGCTTGCACTGCGAGCCCTCATTGTTACCCCAGGACTGGTCTTCTCTTGGCCATCAGCTGAGATCAGAGGAAGAACCTTCTCCATCTTTACCATCTTGTTTCTGAGGGCACGGATCTCTTCATCCTTCATGTTGTTCTGCTTCTTCACCTCTTCCAAGATGTCTTCAAGCTTGTCTATGTGAACTTTGAGGTCGTCCATGTCTGACACGCCTTTGCCGTTGACGAGCACATCTTCGATGCGCTCATCCCCGACTCCCACCGTGTCCCAGACATCCCGAGCGACGGCTCGCCAGGAGTCTCGCTCGTTGGGGTCTTTCTTATTGTACGTGGCACACAGTTCCTTCATCTTCACGATGGCCAAAGCTTCAATCTCTTGTCGACTGTGGCGGAAATCGTTCAGTGCCACCTCGTAGCAGATCTCCTTAACTGCCTGGATCTTCAAATCAGAGATGGTCACCCACTTGGAGTCCTTGGTAAGGCGCCGGCGCTGGGGGACCTGGTACATTTTTACGGGCTCTCTTCTTTTGCCACTGCTGGGTAAGCCACATTTTTTGACTATGGTTTGGAGTTTGCTGGGAGGCAGCTTCTCCCGCAGGGAGGTGATGAGTCTCCAGCTCTCCTCGCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175966 True 4552 TUCP 0.43 2 7468385 7472958

Neighbor

gene id symbol gene type direction distance location
pex14 pex14,LOC107681981,LOC107708844,LOC107586529,LOC107716227,LOC107695784 coding upstream 426351 6924949 ~ 7042034 (+)
masp2 masp2 coding upstream 574022 6850087 ~ 6894363 (+)
cort cort,sst3,LOC107708791,LOC107571809,LOC107695747 coding upstream 640656 6825920 ~ 6827729 (+)
srm srm coding upstream 651354 6810624 ~ 6817031 (+)
smc1a smc1a,LOC107586531,LOC107716226,LOC107695786 coding upstream 659017 6787909 ~ 6809368 (+)
aurkaip1 aurkaip1 coding downstream 446051 7919009 ~ 7922636 (+)
LOC103036256 mxra8 coding downstream 450905 7923863 ~ 7946663 (+)
LOC103035729 dvl1,dvl1a,LOC107708824,LOC107570850 coding downstream 476879 7949837 ~ 8019122 (+)
LOC103036568 NA coding downstream 558575 8031533 ~ 8038450 (+)
LOC107197257 NA coding downstream 1031515 8504473 ~ 8514270 (+)
G130101 pgd,LOC107586524 non-coding upstream 26517 7421156 ~ 7441868 (+)
G130100 NA non-coding upstream 47400 7420755 ~ 7420985 (+)
G130017 NA non-coding upstream 49170 7415865 ~ 7419215 (+)
LOC111194061 NA non-coding upstream 67600 7354358 ~ 7400785 (+)
G129970 NA non-coding upstream 568744 6896496 ~ 6899641 (+)
G130128 ube4b non-coding downstream 71472 7544430 ~ 7548494 (+)
G130140 NA non-coding downstream 114150 7587108 ~ 7587307 (+)
G130145 NA non-coding downstream 137860 7610818 ~ 7611247 (+)
G130151 clstn1 non-coding downstream 146608 7619566 ~ 7621237 (+)
G130169 NA non-coding downstream 205508 7678466 ~ 7678826 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other upstream 53307 7408996 ~ 7415078 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other upstream 1866924 5599278 ~ 5601461 (+)
LOC103033446 LOC103033446,LOC107756391 other upstream 3089718 4300199 ~ 4378667 (+)
hmgn3 hmgn3 other upstream 3096504 4353083 ~ 4371881 (+)
LOC103028602 NA other upstream 3754824 3684923 ~ 3713561 (+)
G130120 LOC107716234,LOC107681965 other downstream 5397 7478355 ~ 7489241 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other downstream 128647 7601605 ~ 7608883 (+)
LOC103037383 LOC103037383,LOC108432529 other downstream 618773 8091731 ~ 8094054 (+)
G130413 NA other downstream 1090692 8563650 ~ 8564575 (+)
cda LOC108416503,LOC108433378 other downstream 1189785 8662743 ~ 8665819 (+)

Expression


Co-expression Network