LOC103033446 (LOC103033446,LOC107756391)


Basic Information

Item Value
gene id LOC103033446
gene name LOC103033446,LOC107756391
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 4300199 ~ 4378667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU174864
CATGTCAAAACTCGCCTGCCCACCTTGTCTTAGAGAAGGTATGCACACACACCTTCACCAGCTCAGCTCCAGTCTACAGCTCCAGTCGCTCTCTCAGGGTCTGTAGCACCATACACACATCTCCCCTCACCATGTCTATTGTTGTGTACTTCAGCAGCGCCAGTGGCTCTAGAGAGGTGAAgcagaggcagagtgagatctTCCAGTTTTTGGACTCAAAGAAGATCATCTATCGTGCGCTGGACATCACACAGAGCTCAGATGTGAAAGACGAAATGAGGAGGAAGGTGGGGAACAACACAGCTCTGCCCCCTCAGATCTTCAACGGAGACAAATACTGCGGGGACTATCAAGCGTTCTCAGACGCAGTGGAAGACGGCAAACCAGAGGCGTTCTTCAAACTCTGAGACACAACACTGAATTCCATAATCTTTTTTAATGTGCAATCATCAATAAATATATGTGCCAAACtgaaaaaaaaaaaaaaaaaaaaaaat
>XM_007257857.2
CAAGTGAGCCATGTCAAAACTCGCCTGCCCACCTTGTCTTAGAGAAGGTATGCACACACACCTTCACCAGCTCAGCTCCAGTCTACAGCTCCAGTCGCTCTCTCAGGGTCTGTAGCACCATACACACATCTCCCCTCACCATGTCTATTGTTGTGTACTTCAGCAGCGCCAGTGGCTCTAGAGAGGTGAAgcagaggcagagtgagatctTCCAGTTTTTGGACTCAAAGAAGATCATCTATCGTGCGCTGGACATCACACAGAGCTCAGATGTGAAAGACGAAATGAGGAGGAAGGTGGGGAACAACACAGCTCTGCCCCCTCAGATCTTCAACGGAGACAAATACTGCGGGGACTATCAAGCGTTCTCAGACGCAGTGGAAGACGGCAAACCAGAGGCGTTCTTCAAACTCTGAGACACAACACTGAATTCCATAATCTTTTTTAATGTGCAATCATCAATAAATATATGTGCCAAACTGA

Function

NR:

description
SH3 domain-binding glutamic acid-rich-like protein 3

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174864 True 497 TUCP 0.46 4 4300208 4378667
XM_007257857.2 False 483 mRNA 0.48 3 4300199 4303764

Neighbor

gene id symbol gene type direction distance location
eya4 eya4 coding upstream 9338 4214630 ~ 4290861 (+)
hbs1l hbs1l,LOC107756395,LOC107723734 coding upstream 375890 3864890 ~ 3924309 (+)
mtfr2 NA coding upstream 541723 3744964 ~ 3758476 (+)
LOC103033565 LOC103033565,LOC108432295 coding upstream 813548 3485651 ~ 3486651 (+)
LOC103033875 LOC108432887,LOC108276383 coding upstream 841837 3446644 ~ 3458362 (+)
phip phip coding downstream 956 4379623 ~ 4439777 (+)
LOC103035284 NA coding downstream 64759 4443426 ~ 4450459 (+)
LOC103036412 LOC108432361,LOC105418227 coding downstream 104942 4483609 ~ 4620968 (+)
LOC103036708 cacnb3b,LOC103036708,LOC108432370,LOC107695823,LOC107570227,LOC108275626,LOC107668566 coding downstream 369661 4748328 ~ 4779920 (+)
rnd1 rnd1,rnd1b,LOC103037018,LOC108275505,LOC107745453,LOC107716191,LOC107668562 coding downstream 432495 4811162 ~ 4834117 (+)
G129274 NA non-coding upstream 2295 4293807 ~ 4297904 (+)
G129234 NA non-coding upstream 435615 3832025 ~ 3864584 (+)
G129235 NA non-coding upstream 464322 3834771 ~ 3835877 (+)
G129119 LOC108432343,LOC108275541,LOC105903259,LOC105022314,LOC107756399,LOC107701744 non-coding upstream 619548 3665666 ~ 3680651 (+)
G129109 pan2 non-coding upstream 677656 3621078 ~ 3622543 (+)
LOC111194055 NA non-coding downstream 79180 4457847 ~ 4480362 (+)
G129303 NA non-coding downstream 214288 4592955 ~ 4858814 (+)
G129301 LOC108433131 non-coding downstream 251318 4629985 ~ 4641969 (+)
G129316 NA non-coding downstream 383000 4761667 ~ 4786163 (+)
G129435 NA non-coding downstream 686348 5065015 ~ 5078851 (+)
LOC103028602 NA other upstream 586638 3684923 ~ 3713561 (+)
LOC103029753 ormdl2,LOC103029753,LOC108276395,LOC107549034 other upstream 638377 3655323 ~ 3661822 (+)
LOC103033013 NA other upstream 765003 3516459 ~ 3535196 (+)
LOC111194053 rnf41,LOC107756409,LOC107701697,LOC107723732,LOC105894303,LOC107671855 other upstream 1045030 3250489 ~ 3255169 (+)
LOC103021564 LOC108432758 other upstream 1418497 2849645 ~ 2881702 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other downstream 1220611 5599278 ~ 5601461 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other downstream 3030329 7408996 ~ 7415078 (+)
G130119 NA other downstream 3089718 7468385 ~ 7472958 (+)
G130120 LOC107716234,LOC107681965 other downstream 3099688 7478355 ~ 7489241 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other downstream 3222938 7601605 ~ 7608883 (+)

Expression


Co-expression Network