RNA id: TU174864


Basic Information

Item Value
RNA id TU174864
length 497
RNA type TUCP
GC content 0.46
exon number 4
gene id LOC103033446
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 4300199 ~ 4378667 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGTCAAAACTCGCCTGCCCACCTTGTCTTAGAGAAGGTATGCACACACACCTTCACCAGCTCAGCTCCAGTCTACAGCTCCAGTCGCTCTCTCAGGGTCTGTAGCACCATACACACATCTCCCCTCACCATGTCTATTGTTGTGTACTTCAGCAGCGCCAGTGGCTCTAGAGAGGTGAAgcagaggcagagtgagatctTCCAGTTTTTGGACTCAAAGAAGATCATCTATCGTGCGCTGGACATCACACAGAGCTCAGATGTGAAAGACGAAATGAGGAGGAAGGTGGGGAACAACACAGCTCTGCCCCCTCAGATCTTCAACGGAGACAAATACTGCGGGGACTATCAAGCGTTCTCAGACGCAGTGGAAGACGGCAAACCAGAGGCGTTCTTCAAACTCTGAGACACAACACTGAATTCCATAATCTTTTTTAATGTGCAATCATCAATAAATATATGTGCCAAACtgaaaaaaaaaaaaaaaaaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174868 lncRNA upstream 2304 4293807 ~ 4297904 (+) False G129274
TU174865 lncRNA upstream 2304 4295418 ~ 4297904 (+) True G129274
TU174869 lncRNA upstream 4815 4293807 ~ 4295393 (+) False G129274
TU174813 lncRNA upstream 435624 3832025 ~ 3864584 (+) True G129234
TU174814 lncRNA upstream 464331 3834771 ~ 3835877 (+) True G129235
XR_002650855.1 lncRNA downstream 79180 4457847 ~ 4480362 (+) True LOC111194055
TU174913 lncRNA downstream 214288 4592955 ~ 4858814 (+) True G129303
TU174910 lncRNA downstream 251318 4629985 ~ 4641969 (+) True G129301
TU174940 lncRNA downstream 383000 4761667 ~ 4786163 (+) True G129316
TU175080 lncRNA downstream 686348 5065015 ~ 5078851 (+) True G129435
XM_022676849.1 mRNA upstream 9347 4214630 ~ 4290861 (+) False eya4
XM_022676847.1 mRNA upstream 9347 4214631 ~ 4290861 (+) True eya4
XM_022676846.1 mRNA upstream 9347 4214631 ~ 4290861 (+) False eya4
XM_022676848.1 mRNA upstream 9347 4214631 ~ 4290861 (+) False eya4
XM_022676850.1 mRNA upstream 9347 4214632 ~ 4290861 (+) False eya4
XM_022676862.1 mRNA downstream 956 4379623 ~ 4439777 (+) False phip
XM_022676865.1 mRNA downstream 956 4379623 ~ 4439777 (+) False phip
XM_022676861.1 mRNA downstream 957 4379624 ~ 4439777 (+) True phip
XM_022676863.1 mRNA downstream 957 4379624 ~ 4439777 (+) False phip
XM_007257864.2 mRNA downstream 64759 4443426 ~ 4450459 (+) True LOC103035284
TU174638 other upstream 638414 3655350 ~ 3661794 (+) False LOC103029753
TU174559 other upstream 1045144 3250508 ~ 3255064 (+) False LOC111194053
TU174428 other upstream 1419095 2849645 ~ 2881113 (+) False LOC103021564
TU174333 other upstream 1606742 2690812 ~ 2693466 (+) True G128939
XR_002650851.1 other upstream 1900174 2398041 ~ 2400034 (+) False LOC103045393
TU175303 other downstream 1220670 5599337 ~ 5601461 (+) False LOC103039794
XR_454553.3 other downstream 3030333 7409000 ~ 7415078 (+) False tardbp
XR_002650866.1 other downstream 3030333 7409000 ~ 7415078 (+) False tardbp
TU175966 other downstream 3089718 7468385 ~ 7472958 (+) True G130119
TU175967 other downstream 3099688 7478355 ~ 7489241 (+) True G130120

Expression Profile