G129235


Basic Information

Item Value
gene id G129235
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 3834771 ~ 3835877 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU174814
GGAAACATCCCTTGATGGAAGGAAAAGTTATGCATATACTCTATTATAGTCTATGTTGCAAAGCTCATCgtcatttcatcatttctatTTCTgcctcatcattttttaaataaacaaaattctaCATActctaactATCTGATCTCTATTGTGAATCACTCTTGATGCTATACTTTTTGTGTATACACATTTTAGATTCTCTATACTTTATTGTGAATACTTATTATATAGGCTTAGTTGTAGTAGTTTGTACATCTTCCTCCATCCAGTTATCTGAAGATTTAGAGCAGGTCAACTGATTTCATCTCAATTAAAACAGAGATTCCTAATTATTGATCATATGTCACATGCATACATTCATGGGAATTGGGCTCAGATCAGGGGTGGGCAGATCTGGTTCTAGAGGGCTGTATTTTTGCACAGTTCAGTGCTTTTCTGCTCaggcacacctgattcaacttaTCTCTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174814 True 470 lncRNA 0.35 2 3834771 3835877

Neighbor

gene id symbol gene type direction distance location
mtfr2 NA coding upstream 76295 3744964 ~ 3758476 (+)
LOC103033565 LOC103033565,LOC108432295 coding upstream 348120 3485651 ~ 3486651 (+)
LOC103033875 LOC108432887,LOC108276383 coding upstream 376409 3446644 ~ 3458362 (+)
LOC103034414 LOC108432878 coding upstream 448957 3350366 ~ 3385814 (+)
LOC103034729 NA coding upstream 509125 3320569 ~ 3325646 (+)
hbs1l hbs1l,LOC107756395,LOC107723734 coding downstream 29013 3864890 ~ 3924309 (+)
eya4 eya4 coding downstream 378753 4214630 ~ 4290861 (+)
lca5 lca5 coding downstream 494627 4330504 ~ 4349368 (+)
phip phip coding downstream 543746 4379623 ~ 4439777 (+)
LOC103035284 NA coding downstream 607549 4443426 ~ 4450459 (+)
G129119 LOC108432343,LOC108275541,LOC105903259,LOC105022314,LOC107756399,LOC107701744 non-coding upstream 154120 3665666 ~ 3680651 (+)
G129109 pan2 non-coding upstream 212228 3621078 ~ 3622543 (+)
G129104 NA non-coding upstream 228948 3605340 ~ 3605823 (+)
G129093 NA non-coding upstream 269772 3537809 ~ 3564999 (+)
G129089 NA non-coding upstream 298097 3495402 ~ 3536674 (+)
G129274 NA non-coding downstream 457930 4293807 ~ 4297904 (+)
G129275 NA non-coding downstream 471411 4307288 ~ 4309978 (+)
LOC111194055 NA non-coding downstream 621970 4457847 ~ 4480362 (+)
G129303 NA non-coding downstream 757078 4592955 ~ 4858814 (+)
G129301 LOC108433131 non-coding downstream 794108 4629985 ~ 4641969 (+)
LOC103028602 NA other upstream 121210 3684923 ~ 3713561 (+)
LOC103029753 ormdl2,LOC103029753,LOC108276395,LOC107549034 other upstream 172949 3655323 ~ 3661822 (+)
LOC103033013 NA other upstream 299575 3516459 ~ 3535196 (+)
LOC111194053 rnf41,LOC107756409,LOC107701697,LOC107723732,LOC105894303,LOC107671855 other upstream 579602 3250489 ~ 3255169 (+)
LOC103021564 LOC108432758 other upstream 953069 2849645 ~ 2881702 (+)
LOC103033446 LOC103033446,LOC107756391 other downstream 464322 4300199 ~ 4378667 (+)
hmgn3 hmgn3 other downstream 517206 4353083 ~ 4371881 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other downstream 1763401 5599278 ~ 5601461 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other downstream 3573119 7408996 ~ 7415078 (+)
G130119 NA other downstream 3632508 7468385 ~ 7472958 (+)

Expression


Co-expression Network