LOC103036708 (cacnb3b,LOC103036708,LOC108432370,LOC107695823,LOC107570227,LOC108275626,LOC107668566)


Basic Information

Item Value
gene id LOC103036708
gene name cacnb3b,LOC103036708,LOC108432370,LOC107695823,LOC107570227,LOC108275626,LOC107668566
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 4748328 ~ 4779920 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257869.3
GAAGCAGTGGgagggtgtgtgtgcgtgtctgttcgtgtgtgtgtgtgtgtgattgtgtgtgagtgtgtgcactCGCTCGACTCGGCGCAGCTCCACTGCTGCAGTCAGGGCATCAATTTTGTATAGGCGCTGAGCAGGAGCACTTGCTAGCACCAGGCCCTGCTCTCCTCTTCCATTcccttcatccctccatcctcctcctcctcctcctccgccgctgctgctgctctctccTCCGCTCGGTCTGccagcctgctgctgctgctgctctcgcTCCTGCTGGCCATGGAGAGCGGCTCCATCCGCCTCTGAGCCATGGAGCCGCAGCCCAGCCTGAGTGTACATGCAGCATGTCTGCGTCTGATTCCAGTGCAGCGCTTCTTAGTGGCAAGGGTTCGGCTGATTCCTACACGAGTAGACCCTCGGATTCCGACCTGTCCCTGGAGGAGGATAAGGAGGCGTCTCGGCGGGAAGCCGAGCGCCAGGCCCTGCTGCAGCTCGAGAGAGCCAAGACCAAACCTGTGGCTTTTGCAGTGAAAACCAATGTCAGCTACTGTGGGGCCTTAGATGAGGACTGTCCTGTGCAGGGCGCTGCCATCAACTTCGAAACCAAAGACTTTCTACACATAAAAGAGAAGTACAGCAATGACTGGTGGATCGGACGGCTGGTGAAGGAGGGGGCTGATATCAGCTTCATCCCCAGCCCTGTTAAACTGGAGGCCATGCGCCTCAAACAGGAACTGAAAGCTGCACAGAGAAAACCAGGAGGAAGACCCACACCTCCATCTTCAGCTaaacagaagcagaagcagACGGAACATGTTCCACCGTATGATGTCGTACCGTCCATGAGGCCAGTGGTGCTGGTTGGGCCCTCACTGAAAGGATATGAGgtgaCAGATATGATGCAGAAAGCACTGTTTGACTTCCTCAAGCACAGGTTTGATGGAAGAATCTCGATCACACGAGTGACTGCGGATCTGTCTCTAGCCAAGAGGTCTGTGCTAAATAAGAAAGCCATTATGGAAAGGTCCAACACACGCTCCAGTTTAGCGGAGGttcagagtgagatagagaggaTATTTGAGTTGGCGAAGTCTTTACAGTTGGTGGTATTAGATGCAGACACAATTAACCATCCAGCACAACTGTCCAAAACATCACTCGCCCCCATCATCGTCTATGTGAAGGTGTCATCACCCAAGGTCCTCCAAAGACTCATCAAATCCAGAGGAAAGTCTCAAAGCAAACACCTGAATGTGCAGATGATGGCAGGAGATAAACTCGCCCAGTGCCCACCGGAAATGTTTGATGTCATCCTGGATGAGAATCAGCTGGAGGATGCATGTGAACACCTGGCTGAGTATCTGGACATTTACTGGCGTGCTACCCACCTACCAGGTTCAGCTCCTGTGAACCCTCTACTGGAGCAGAACGTGGTGACCCCACCCTCGGCTAACTCCAGCCAACAGTTCTCTGAGACTCAAGAGTTGATTGAATGAGTGTTACTACAGATCTGGCTTGTTCTAAGATTCGTCAGAGGGGCACGGATTGTTCTGAAGCCCCTCCCAGTCCATCTCTCAGAGGCCAGCCACTCTCTGCCCCTGAGCGGGAGGAGCTCAGAGCAGCTGCCCcctgaggaagaggaagaggagtaggaggaggagaaggaggaggaggaggttagaagaagaagaatagagCAGGATAAATAAGGAAGGGGACCAACCCCACCGTCCTGAGCACACAGGAGGTGCAGCTTAACGCCCACCCAGCACAACCACACGTGCCAGCCGCTACGTCTCAGGACCGCTCCGCTGcagcacaatacacacacacacacacacacacatacacacacacaactgagaTACACAATACCTGCCAGCACATCTTTACAGACTACATACAGTCTATGTCAAAAAGTGTCCAGACAGTCCTTTTAATTAGCGGACCAGTAGACTATTTAAAGCCCACTCAGTGCTGACACAGGGGTTAAACTGCACACACATAACTGTGTAATATCTACAGAAAAGCATTGCCTGTAGAAACACTCTATAGATCTTTTTTTATGCAATGCAAAGCATCAGCATGAAGTGGAGTGATGCTCAGTGGCATTGGATTGTGGAGAATCACACTCAGCTAAGTGTCAGCTATGAGGTATGGGATATGGGATGAGTTAGAGTGATTAAGCTCCATTGAAGAACTTGAAAAAGATGAGTTGATGACTGATTGAGTGATGATGctgcattaaaataatttgGACATACTGTATGAAGCTCTATTTAGGACCTTTGGGATCATTTTGGATCAGTTGCAATGTGTTGGAGTGATGAAGCACTATTGAAAGGCTTTGAGATGAGTCAGGGTGATGAATTGCCATTGAAGACCTTTGGAATGAGCTAGAGTAATTAATCTCTATGTAGGATCTTTGGTGTGAGATACAGCAATGAATCACCAGTGCAGACCTTTGAGATACAGGAGGTCTAATGGTCCATTAAAgacctttgggatgagttggatgTATAACAGTCCATTGAAgacctttgggatgagttggatgTATAACAGTCCATTGAAGACCTCTGGGATAAGTTGGAGGTAAAACAGTCCATTGAAGACCTTTAAGGTGAGCTGTGGTGGTGAATCTCAATTGAAGAACTGTGGGATGCGTTAGAAAGTTAAAGCTCCATTAAAATCTTTTGAGATtagctaaataaagaaatgaagctAAGTTGAACACCTTTTAGAGGAATCAGAGTGATGAAACAGTATTGAAcatctttgggatgagttggagttaTGGTGCGCCATTAAACATATTTTGGATGTGGAGTGATGAAGCTTAAGTTGAAGATCATTTACAATAATTTAAAGATCTTTGAGATGAGCCAAGTGATGCAGCTTCTGTGTAGAGATGAGCAAAATGAGCCAGAGTGAGCAAATACCTCCAAATATGATTTTTCACCAAACTCACTTTGATGCACTTGATGCTTTTTAtgttaaacataaaaagtaGGGGTCTGGACActtttggacatacagtgtacaagcatacacatacacacacatatgcatacacacaaacacacactgacatacaCAGTCAGCACACCTGGTCTTAGCTGCCCCACTGAGACCTGGATTAAGGCCCACAGTGGTTTTCCCCACTTCCTGGGTGAAGCCTTCTGTCAGAAAGGCTCTGCCAACTTAGTGCTGCTCTCTGGGGTGAAGTTGGCACTGGCATCAGAGCATTAGTGCCACACTGCCCCACAGAGGAAGCCACCCCATGAGAAAAAACACATCCTCTTACCCTACTGCCACTCCATAACACACATGACATGTCCTGCACACCTGCCGCGCTGACTATCTAAGTTTGCTACTGCCACTTAAACTGCTAAATCCACTGCTAAATTTCAGTTATGTGCTGAAATAGCCTGAACTAAAGGAGAATTACACtgattttttctacattttaagcCAAGGGGTtacaagtcaagaggcttttatcgTCATTCCTACTGAGTACAAGTATACAGTGAAACAAAACTGAGGAACTGCATACCTCTAGGAACATGGTGCACCATGGAACACACAGTACAATATAGAAAGCATAAAACATGTCAAAACATAAAACTAGCACCAAAACACTACAATTGTGTTAAATATATAGAAACGTCTTGACTCACAATGTCTACAAGAGAAATTACAAGAGCCACCAATTACCACCAATTACATTATGACATTGCATGAGTTATATTTCACAGTAATAAtggtaaaataatgttttttctgttttagaaTTATTACATAAGGCAGTGTCTTTTACACCAGGAGTTCCCAACCTTTTCCAGCACCATGTTTTACAGCCCGCACAAAATTCAATCAACCATTTACAAGCTAAACAATTACAGCACAATAATCATT

Function

symbol description
cacnb3b Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be part of voltage-gated calcium channel complex. Is expressed in nervous system and otic vesicle. Orthologous to human CACNB3 (calcium voltage-gated channel auxiliary subunit beta 3).

NR:

description
voltage-dependent L-type calcium channel subunit beta-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257869.3 True 3927 mRNA 0.47 14 4748328 4779920

Neighbor

gene id symbol gene type direction distance location
LOC103036412 LOC108432361,LOC105418227 coding upstream 127360 4483609 ~ 4620968 (+)
LOC103035284 NA coding upstream 297869 4443426 ~ 4450459 (+)
phip phip coding upstream 308551 4379623 ~ 4439777 (+)
lca5 lca5 coding upstream 398960 4330504 ~ 4349368 (+)
eya4 eya4 coding upstream 457467 4214630 ~ 4290861 (+)
rnd1 rnd1,rnd1b,LOC103037018,LOC108275505,LOC107745453,LOC107716191,LOC107668562 coding downstream 31242 4811162 ~ 4834117 (+)
LOC103037656 ptges3,ptges3a,LOC108433158,LOC107745455,LOC107570321,LOC107716195 coding downstream 107945 4887865 ~ 4893468 (+)
LOC103037977 LOC103037977,LOC108432382,LOC105897308,LOC103368323 coding downstream 121711 4901631 ~ 4905406 (+)
LOC111194057 NA coding downstream 446489 5226409 ~ 5234926 (+)
wnt1 wnt1,LOC107695811,LOC107563635 coding downstream 784145 5564065 ~ 5576733 (+)
G129301 LOC108433131 non-coding upstream 106359 4629985 ~ 4641969 (+)
LOC111194055 NA non-coding upstream 267966 4457847 ~ 4480362 (+)
G129275 NA non-coding upstream 438350 4307288 ~ 4309978 (+)
G129274 NA non-coding upstream 450424 4293807 ~ 4297904 (+)
G129234 NA non-coding upstream 883744 3832025 ~ 3864584 (+)
G129435 NA non-coding downstream 285095 5065015 ~ 5078851 (+)
G129458 scn8aa,LOC108433193,LOC100304804 non-coding downstream 340366 5120286 ~ 5126142 (+)
G129480 NA non-coding downstream 462997 5242917 ~ 5290447 (+)
G129515 NA non-coding downstream 567698 5347618 ~ 5348189 (+)
G129518 NA non-coding downstream 573161 5353081 ~ 5353813 (+)
LOC103033446 LOC103033446,LOC107756391 other upstream 369661 4300199 ~ 4378667 (+)
hmgn3 hmgn3 other upstream 376447 4353083 ~ 4371881 (+)
LOC103028602 NA other upstream 1034767 3684923 ~ 3713561 (+)
LOC103029753 ormdl2,LOC103029753,LOC108276395,LOC107549034 other upstream 1086506 3655323 ~ 3661822 (+)
LOC103033013 NA other upstream 1213132 3516459 ~ 3535196 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other downstream 819358 5599278 ~ 5601461 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other downstream 2629076 7408996 ~ 7415078 (+)
G130119 NA other downstream 2688465 7468385 ~ 7472958 (+)
G130120 LOC107716234,LOC107681965 other downstream 2698435 7478355 ~ 7489241 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other downstream 2821685 7601605 ~ 7608883 (+)

Expression


Co-expression Network