G129458 (scn8aa,LOC108433193,LOC100304804)


Basic Information

Item Value
gene id G129458
gene name scn8aa,LOC108433193,LOC100304804
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5120286 ~ 5126142 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU175108
CTGGCTTTGTAACGAAGGCATGCTGTACCCTGATGTATGGCATCACAGTGCTataatatttgcatatttgtagTTCTGTAAAGTTCTGATCCCCAATGAAAGCAgaagacgtttttttttataactggaAGGCTGctttattgttaataaaaagGTTCGTGCTCAAATGAAGATAATTTTTATATGTTCTTACTAAGAGTCCAAGTGGTTGTGCCACACACACCATAATATGTCCTCCTACAACACTGTGTCAAACAATAACAACAGTTTGAAAAGCACTTTTGAAATCTTTTTCAGCAAAAtggaaaaagcattttttttttcatcatgctCAAAAATGGAACAGTCCAATAACTGAATACTGATACAAAAGTGAGTCTCAGATGgaaagaacacaaaaaaaaatcagaaggcaagctatttttctttttcacaagCCAAGTGGATGATATACACACAGAGTACAGAAAACAGAACATCTGAACAGTTTTGTAACACCAAATCTAGGAGAAAGTgggctttttttgtatttgttcccCCTTGGTTTGTATAGGTATTCCTCTGGCAGTATGTCAGACACCTTGTACAGACTCAGTACAGTCCCTGATTTGCATTGtgctccgttttttttttttttttaatttcccctCCTCTCTTCCCCCTCCTTAGGTTGATCAATAAATATGGCACCGTCCTCCAAGACTGCAGGGAGAAAAGCATTTGAGAAAACGAGGAACGCAGGAACATGGAGAGAACGCAGAGAAAAAGGCACACACAATTCGTGAAGTAGCACAAGTGGATGAACCGATGAACGTGTAGAAATTTAAGAAGAAGAGCGAAACAGATGTGCtgagagatagaaaaaaatacttaaagtcCTGGTCGGAGGATTGATTACTTCACCGAAGCGTTTGCTGTTTGGGGAGGCCTTGGACGAACACGGTACAGCATCAGCATCATCTCTCAGTGGCTGTTGAATATTTCCGCTTACAGTGTGTGATTGATTACATTGTCCGTTTACATGAGTAAGACGACTGAGCGAGCATATGTGCACCTATGCGTGTTagagtgtgtaggtgtgtgtgtgtgtgtctttgtgtaaGGGGCCTTTAGAAAGTTAGTACTTGGAATTCACAAAGATGTGCTGGTAGTATAATCATCGTTATCATACAGTATCAAGTTCGAGCAgctccaataaaaaataaaaaataaaaataaaataaaaataataaatcgtGCGTGAACACAAAAGAGTTCATCAACATCCACTGGACGTGTTgcatatataaacaaaatgtgACAGtgctctttttatgtatatatagaTTTGTTGTATAGCTTGTCTAATATAGTATCCATGGTACATTATATCATTCAGTTCTTCTCAACAAtgtgaagtgtttaaaaaaaaaaaaaaaaaaaaaaagaaaaaagaaatgaaaaaaaagaaaggtaagAAATTTGACATGGGCATCAGCTGGAAGCCTTTCTTACATTGTTGTTATAGtctgattattattagtattattattcatattattatttcatCTGTAAAATTCATCtgtatttacaaaaaaacacaacaatgcaTGCTGTTTAAAAGAAAAGCGTATATATTACAATACTTCTCGTCTCTCAagtttattcttcttcttcttcttattcacGTTTTCAGCAATTGTGCCATGTACATCATAGCCCCCCACTGAACGATACATTAACATACAGTGTGTCatacagtgtgtaaatgtgttttttttttacaacacagtACAACAGTACAGGATTCGGGGAGGGAGGAGAGGGaggtgtggtttggtttgtttgttttttgttttgttttgtttttttaggagaAATTGCATGGTAGTCTATGCTTTCTTTCCGCTGGGCACTGATTTGGATGGAGTCCACAGTCCCACTCTGATTTGGAGACAGTAGGCAGTAGGCAGACCCACAGGCAGGTctgagagggagagggggagtGGGGCtgtaaacactaaaatacacaacagtctcacacacacacacacacattctcatacacacatacatacatacatacattcacGCATGCGTGCATACACACAGGCTCTGATGGTGTAAATTCTCTGACTCCGGGCGTGGTGACGCAGAGTGCCCGGTTCACTACTGGACTAGGGACTAGTCTTCAGCCCCTTGTACGTCAGAGAAGAGCATGGCAGGTAAGAGCAAGTttgaccttttaaaaaaaaaatctctcaacACCTCTGAAGTCCTCGTcataaaaaagactttaactACTGATCATATTTGTAAAACTTGTTCTCCAATTCCCTGTAACTTGTGATGGACGGACAGACACTCTGGGATAGCCCATGCTGTGAGTGGAATCTCCttaaagagacacagagcgagAGAATAATAGCATAAAGAAgtcatttctttctctttcgaGGTGTACAAAAAGAGAGGTTTTGCATCAAGAGCAAAATTGGATGGCAGTTTGCTCGAGAGGTGCCAAACGTAGTGTCTTTACGTTGTCATATAGGCATCTGCACCTAAAACAATAATGGcaatagtttaatattaaacatatatttgaaCTGATGATGTTATACCTCCTATATAACCTGCAGCATTAGGCACACTAACTCCTCCTTCTCAGACAAGAGCGTCAGGCCTCAAGtacatcatatatcatatcatatataagTATCATGCACTCTGGATACGGTCTATTCACTCAACACCAATCAACAGTCAGAAAGATTATCcccattaaaacattaaaaccggTCATCGGCGGACGTGTGGACGCGTTCAAAATAGCGTAGCTACCCTACTGCTCCCTCTCGCTAGCTTCTTCACCAAGACAAAGCACATCAACAACCCCCTGATATGATCAGAATGAGCGTGTATGTAAGAGTTACCTtcaaaacattaacaaaaaaacaaacaaaaagtacagagaaaacagagagtcTCAACATAAAACGCATGTTAAAGAAATCACCTCCAATTGAGGCCTGGTCCCGACTGACAGACAAAGCATTGTAAGAGATTACATGATTACATTGGCATGGTGGCTCGCTGcaaccttatatatatatatagatatatatgtaGATACCTTGAATGTATGAAGTTCAGCTTTAAAAAGACCCTTGACTGCACACAAAAGACTAGAAACAAAGGGTCAAACCACATTGCTGgtggaaagaaaaacaaatcagGGTTCGTTGGCCCCAAGATTTGATTTGAattatagagttatttctaAACTTCAGTGCATCTTTCTGGAAGTTCCTAAAGTCTAGGGCAGTGAAACACCGTTTGTAAGTGAGTGTAGAGATCCTTCAAGTGCACCACGacatatattgtaaaaataaaaataaaaataaataataaaaagacgtTTGATCTTCCACTGACGACTAGATCTTGCATGATGTGTTGAGTGTTGAGTAGTTGTAAAGCAATGCGTATGAATGGGTAAGTACgaatacaaatacatatatttgcAAAAACCCAGTTTTTGGATAATGTTCCCAATTGGTTCCCTTTCCAGTGGAATTTCTACTGAAATGTGTTGCCAGTGGACAGCCTCAAACTTGTGTTCAAGCCACGTCTGTGGTCTGAGCAGAAGTGTCAAGTGGACTATGATTACACATGCATGATTTCTGATCAAAACATGCCACCATGCAAGTCATTTCTATGCATTGAACGAGCACaattaattacttatttatctGGAACCTGGTCTGAGCAAGTTCCTTTCAGCCCAAGTCAAAACCCTGATAAATGACCCCCCGCCTACCCAATTGCAGTGTGAAAGCCCatgtaaaaaatgtcttttttacgCAAGTATAACAAAGAGATGATGAAAAGACTAGTGTGACATGGGCTgaatgtttctctttttttttaaaccttctttttttgctgaccaaataatgtaaagatgCAAGTATACTGATCACACACAACTGAAAAAAACCCTTGCATattgttctgggttttttttttgttaagttttttctcttttttcattttctcagtATCTTCTCTCATTTTCACCATCTCTGCTAGGAACTGTTCCTTTCCGGTAGTCACATGAAAATGTTCCAGAAACCTTCCTGTGTTACCAAGTGGGAGGATTCCACTGGATTTCGGcagtgtagtgttttttttgtaagggGTAAATTCGTAGTGGAGGAATGCTGAACTCCACACATAGTGGTGTGAAAGAAGCCATCTTTAAAACGTCTACTCTGTATACCGCTCAGTCCTATGGCAGGTGGTCCCGATTGAAGTTATCTGCCATGGGCTTTTCTTGCTGAATATTATTATACGTTTTTGTCGCTCTGGCTGCTGTTCAAGCAGCGGAATCTTGGTTGCTGAGCTCAGGCGCCACGCGGTAAGCTCgttatggtttggtttggtcgTAATCAACGTGGTAAGAAACCATGCTGCTTTTTCTGCACTGGCGCAGCTCAGAAGTCtgtaaacaacttttttttcggATTTTCTGGGTTTTCTTTGAAAagattttttgtacatttgtttgAACGGATACAGAGTTTCCTTTTAATTCTTAATGTCTCTTTCTGTTCATTCCCTCTGTTCATACTTTTAACACTTAGATTCCTTAACGTCTTTTTGGTTTTTGCCTTTCTTGCCTTTGCTTTCGCTGTCGTCCAGTTTCTCTTTCTCAGGTTTGGTCACACTGTCGTAGGAGGGCAGTGAGGCAGTAGACGGTGTTCCTTCCTTCTTGTCCTGGTTGGTCCCTCCGTTCTCCAGCCTGCTGCTGCCGAGGAACCTTTTGCAGATGAAACCTTGGCGCACCAGGTGAGCGCGGTAAGCTCGCTGGATGACCTGAGCGGACATGTGCTCCTGCTTGCGTCGCATAGTTGTGGTAATGGGCTCAAAGGACACCTTGGAGGGGTTGGCGGCAATGAAGCGCTCCTCCATCTGCTGACGCATCATGTCCAAGTCGCCACTGTCGCCCAGGACGCGCTTGGTGAAGGCGAACAGAATGTCCAGGCAGTGTATGCGGTCTCCGCTCACCATGGGCAGGTCCATGGCGATGAGTTCTATAGTGTTGGGTTTGGGCACCCGCAGCGGGTGCTCCAGAGTGTCGGCGAAGTCACTAAGCTTTGCGAATGAAATAAACTGCGAGGCAGTGGGGTCAAACTTCTCCCAGATCTCGTAGAAAGACTCAAAGTCGTCCTCACACAGAGGATCTGCGCTCTCTTCTGTCGCCACGCTGAAGTTCTCCAGGATGATGGCGATGTACATGTTCACCACAATCAAGAAAGACACAATGATGTACATGACAAAGAAGAAAATGCCCACGGAAGGATTGCCGCAGTTACCCTTCACCGTGGTGCCCGGATTCTCTTTATTAGGGTCGCAGTCGGGAGCGTAGTTGAGGATGGGAGCCAACAGACCGTCCCACCCTGCAGAGGTGGTGATCATAAACAGGCAGATCATGCTGTTCCCGAAGGTTTCAAAGTTGTACATGTCGTCGATACCCGCCTCCCGTTTGACGTAGGCGAAGTTGGACATCCCGAAGATGGAGAAGATGAACATGACCAGGAACAGCAGCAGGCCGATGTTGAACAGAGCTGGCAGTGACATCATCAGGGCAAACAGTAAAGTTCGGATGCCCTTGGCCCCTTTGATCAGACGCAGGATGCGACCGATTCGGGCCAGACGGATGACCCTGAACAACGTCGGCGACACAAAGTACTTCTCGATCAGATCCGCCAGGAACAT

Function

symbol description
scn8aa Enables voltage-gated sodium channel activity. Acts upstream of or within several processes, including mechanosensory behavior; motor neuron axon guidance; and sodium ion transmembrane transport. Predicted to be integral component of plasma membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in axon. Is expressed in heart; nervous system; otic vesicle; and trigeminal placode. Human ortholog(s) of this gene implicated in benign familial neonatal epilepsy and developmental and epileptic encephalopathy 13. Orthologous to human SCN8A (sodium voltage-gated channel alpha subunit 8).

NR:

description
PREDICTED: sodium channel protein type 8 subunit alpha-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175108 True 5760 lncRNA 0.42 3 5120286 5126142

Neighbor

gene id symbol gene type direction distance location
LOC103037977 LOC103037977,LOC108432382,LOC105897308,LOC103368323 coding upstream 214880 4901631 ~ 4905406 (+)
LOC103037656 ptges3,ptges3a,LOC108433158,LOC107745455,LOC107570321,LOC107716195 coding upstream 226818 4887865 ~ 4893468 (+)
rnd1 rnd1,rnd1b,LOC103037018,LOC108275505,LOC107745453,LOC107716191,LOC107668562 coding upstream 286169 4811162 ~ 4834117 (+)
LOC103036708 cacnb3b,LOC103036708,LOC108432370,LOC107695823,LOC107570227,LOC108275626,LOC107668566 coding upstream 340366 4748328 ~ 4779920 (+)
LOC103036412 LOC108432361,LOC105418227 coding upstream 499318 4483609 ~ 4620968 (+)
LOC111194057 NA coding downstream 100267 5226409 ~ 5234926 (+)
wnt1 wnt1,LOC107695811,LOC107563635 coding downstream 437923 5564065 ~ 5576733 (+)
lmbr1l lmbr1l,LOC107708860,LOC107716206,LOC107681941 coding downstream 504569 5630711 ~ 5670898 (+)
dhh dhh coding downstream 557766 5683908 ~ 5694116 (+)
kmt2d kmt2d,LOC108275851 coding downstream 572586 5698728 ~ 5742467 (+)
G129435 NA non-coding upstream 41435 5065015 ~ 5078851 (+)
G129303 NA non-coding upstream 261472 4592955 ~ 4858814 (+)
G129316 NA non-coding upstream 334123 4761667 ~ 4786163 (+)
G129301 LOC108433131 non-coding upstream 478317 4629985 ~ 4641969 (+)
LOC111194055 NA non-coding upstream 639924 4457847 ~ 4480362 (+)
G129480 NA non-coding downstream 116775 5242917 ~ 5290447 (+)
G129515 NA non-coding downstream 221476 5347618 ~ 5348189 (+)
G129518 NA non-coding downstream 226939 5353081 ~ 5353813 (+)
G129520 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107716075,LOC107563629,LOC107695815 non-coding downstream 232441 5358583 ~ 5495264 (+)
G129525 NA non-coding downstream 258136 5384278 ~ 5430630 (+)
LOC103033446 LOC103033446,LOC107756391 other upstream 741619 4300199 ~ 4378667 (+)
hmgn3 hmgn3 other upstream 748405 4353083 ~ 4371881 (+)
LOC103028602 NA other upstream 1406725 3684923 ~ 3713561 (+)
LOC103029753 ormdl2,LOC103029753,LOC108276395,LOC107549034 other upstream 1458464 3655323 ~ 3661822 (+)
LOC103033013 NA other upstream 1585090 3516459 ~ 3535196 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other downstream 473136 5599278 ~ 5601461 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other downstream 2282854 7408996 ~ 7415078 (+)
G130119 NA other downstream 2342243 7468385 ~ 7472958 (+)
G130120 LOC107716234,LOC107681965 other downstream 2352213 7478355 ~ 7489241 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other downstream 2475463 7601605 ~ 7608883 (+)

Expression


Co-expression Network