rnd1 (rnd1,rnd1b,LOC103037018,LOC108275505,LOC107745453,LOC107716191,LOC107668562)


Basic Information

Item Value
gene id rnd1
gene name rnd1,rnd1b,LOC103037018,LOC108275505,LOC107745453,LOC107716191,LOC107668562
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 4811162 ~ 4834117 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257870.3
GCGCAGCGGCTCAGTCAGTCCAGACAAACCAGCTGCGGGCAACGAGCGAAGAGCTCGGACGTGCTGTCGTTCCCTGAATTcggatcttttttttgttggtgtgaACCCTGTAAAGCGATCATGAAGGAGAGGAGGAACACGCAGCCCTTGGTGGTCAGGTGTAAACTGGTGTTGGTGGGAGATGTACAGTGTGGGAAAACGGCCATGCTGCAGGTTCTGGCTAAGGACTGCTATCCAGAGACCTATGTCCCCACCGTGTTCGAGAATTACACAGCATGTCTGGAGCTTGATGACCAGCGTGTGGAGTTGAGCTTGTGGGATACATCAGGGTCTCCCTACTACGACAACGTGCGACCACTGTGCTACAGCGACTCTGATGCAGTGCTGCTGTGCTTCGACATCAGCCGCCCAGACACTGTGGAGAGCGGACTTAAGAAGTGGAGGACTGAGATCATGGACTTCTGCCCTAACACCCGCATACTCCTCATCGGCTGCAAAACAGACCTACGCACAGACGTCTGTACACTGATGGAGCTCTCCAATCAGAAACAGACGCCCATTACCCATGAGCAGGGCTCAGCCATGGCGAAGCAGCTGGGTGCCGAAACCTACTTGGAGTGCTCGGCCTTCACCTCGGAGAAGAGCATCCACAGCGTGTTCCGCACGGCCGCGCTGGCCTGCATCAACAAGCTGCAGCCTCTGGCCAAGCCCAGCCCCAGCCGCCGCCTCTCCAAGCGCCTGCTGCACCTGCCCAGCCGCTCAGAGCTGCTCTCCTCCACCTTCAAGAAGGAGAAGGCCAAGAGCTGCTCCATCATGTGAGCGCAGGAGGGGGGCTTCAACTCCCCacctacaaaaaaaagcttctccCTCCCCTGCGCTTTGGTCTGGGGAAGGGGGGTGGGCTCTGATGTCCGTCATCAACGAAGGCTTCGCTGTGGAATCCTTCCTCACCCCCCAACAGAAACACGTTTCAGAACAAGTGGACACCTCGCTGTCCACCTTGTCCTGATCTCTGCAACAGTGCATATCTGTCTTACCCAGTACTGTATCTTGCTTTTCTCAAACCGATCATTCAAGGTTTGATCATTCAGATGTGCCATCGcatcattcttcttcttcttcttcttcaccacCGTGTCAAGAGAATCAATCGCTCGCCGCTCGCCTCAGCGTTATCATGACGTTTTAGGTTCATGATGATTCGGATTTGGCTTAGTAGATAGATGAGAATACAatggtcagaaaaaaaaaacaggctgtgaTATTATGTGGTATTAAATGCCTTTGGAACTGCTCGccgtattattattactattattactattgctaTTATTATTGGCTCTCTAGTTTCAGACATATCTGGGTGACGATCGAAGATGAAAAACATATGTAGTGTATGCACTGAAGTGAAGGTTGAGAGGGTGGCTCATAAGTAAGAGCTTTGGGAAGCGGTGTAAGGCCCGGGCCGTGTCGCATTTTCGCATTTTGGAGGAAAGAGGTGGGCACTGGTTGTGGGCACTGTTTTAGCATTGCTAGGTAGGACTTAGCATAGCTAGGCATTAGAATGGTGGATGGAATTGGCTGCTATGCAGACTGAATACTGTTGTGTAATTTCTATTGGAACTTGCCTGGTATGTCAGGCTTTTTGATTAGCTAGAAAAAAGGGACACAACTAATAGACAAGAACATTTGGACAGTGAATTCTAAAGGCTACCAAAGACGCGTTTCTTATCTTTTCCAGACCTCTAATGATTAAATACCAACCAACGTGTTGTACATGCTTCTATTTTTACAGAAGCAATAAAATAACTGTCCAATAGAGAGTGGAGAACCATACATGATGGACTGGTAGACTGGGGGAATGGTGGAATGGTGGATTGGTGGACTGTTGGTCCTCCTGATCTTCTGTAGTGTAGAAAACCTAGCCTCTGTGAGAACTCCAAAGCGTTGAGCATTAAActgatttgaactgaatttTGAATCGACTATTTTTTCGGTATTGTTCTTGGTCTTCGGAAAGCTTTTGTAGCACTGCGTTGATGATGTTTTTCAACTAATCAACaaggattaaaaaataaatatatgaataattgTATGCAGCAACGATAGcattttcaatatttcaatCGTTCAGACTTTCAGTAGAGCTCAGCTTGAAATCAGACCATCGCCACTGCACGTCACTTCTAatgttttttgggggttttattTGTATGCATTTCTCTCTTCAGAATCCTCCTGATGTAGCACTCCATCTTCCACCAGTagctctctatctctatccctctctctctctctctctctctctctctcatgttcttttacttgctctttctctctcctgtgtACGTACAGGTACAGGTTTCCATCGCCTTTAATGCCCCGAGCTTCAACGCAAGCAAACTTTTACGACTTTTTTTTACCGTCGTTTTTTACGGCAGACACATTCGCAGGTGGTTTTTGGTTCAGTTGGTGTATCTAAACGCAAGTCCTTCGGACAAAATTTTCGAGCTTCTCGGTTTCTTGAGTGCTGATAGTGCCAATATCGAAAACCTGCTTTTGACCACAAAGCAATAACAATTGACATGCTTGTGTCGCAGATTATATAGAGTGGCAATAATACGgaaaaatatctataaaaaatTAAGTGCGTAAAATACCGCTTTGTGATTTAACTTCATGCGACAGCTTTGTGGACGTGTGTGTGGCCGTGCCTCCATTACTGCTgtaaaaagaataaatgaataagtgaacaaataaaaaactgaaaaaaaacgaACCAGCTTAACTATTAGTAATTCTGTTTTCCAGCCCTTCTTGTAGCCGGGGTCGTTGTGTTGGAGTGAGTAAACCGTGACGTCTGTTTGTGTCACACAGATCTAGTGTGGGACTTGGGGACTTGTGAAGTTAACACACCAGACaccatttaagtatttaaagtatttaagtgcagcacagtgtaacagtgtaatgtCACCAGGCGTGGTTTGAGGCACATGGGCAGGCTCTGTTGGCGTGACGGGGTGGTAAAGGACTCTTTTAAGAGCGTGGAGACGAGGAGCCAAAGGCATGCGAGATCTTTCACGGGTCTCTGCATTCAGACAAGACCGCTCGGTCCGCTCGCTTTAATGTATGGAACAATCGACTCGTGACAATGGCTTGGGGGGGGTGGGATAAGGGGTGGGTGATGGAGTGCGTCCTGGTGAAATGGTAACGATAAAGGGTGGAGGGGGAGGAGTAAGGGGATAAAAGGACTtctggaatttaaaaaaaaagaaaaaaaactacaaaccaACAGGCTGGTCCTGTTTAGAGAAagctattttttcatttttcagattgaACCATTGTGCTGTTTgattttgtttgcattgttgttgttgctgttgttattgttgttgttgttgtaattttttatttgtctccACCTGAAATCGATATTTATCTCATTTGGTTCAAACCACTGTTATCTACGGCTTCAGGTGGTGATTTGCGAGCTCTGAACTCTCTCCGGTCACACGCCGAATTTCCAACCATTGCCTAGCAACTGTTGAAgtaaaaaaagggagagaatgCCAGTTATACTCTTTGGGGTTGGGGAGAGAACCTCAGACCACTAGCCAGTCTCACTACTGCAGCTACAGATAGAAATACAAATAGAAATACCAGTGCCATCCTAGAGAGAGTACCAGCTTTGGGTTATAGAGGTGATATTTACTCTCAATCATATAACAAAATAGTGGTTATGATTCAATATGTTGCGATACATTTTGCAGTACTATAAGAAAGACGGTGAattacaacacaaaataaaacaaactactctctgacaccaatctttacatgcaaactatttacaaaaatcaaaactacattttaaagaatcagtccagtattgcaaaacatcaAAACACTTCTGTATatcgatattttcttacacctctaacacacacacacaaacacatcaagGCTTTGACATGAGACAGTATAGGTTCCGTACATTCCACCATGATGCTGCCGTTGTGTACTAGTGGGCACAGTTATACTTCTAAGCATGTCTTCTCTATCGATGATCCGAGTTGTACATATCTTCTTTTATAATCTTTGTAAGACACCGAAAAGAATGCCATGAGGTGTGACTATTTGTTCTTGTCGTGGGTTGACCAAGATGTTGTGGttgatgtataataataatattaattcagTCCTATTTATTTGAATACAACATGGAAGATTGATATTTTTtggtttttgtgttttacatgtACTTTTGTTTTTCACAGAATTATTTTTTGACATGATGTCCTTTCTTCCTTTTGTCTTTCCAGTAATAAAGCTTGCCTTGTGTGGCACTCATGA

Function

symbol description
rnd1b Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in several structures, including blastomere; germ ring; margin; optic primordium; and presumptive mesoderm. Orthologous to human RND1 (Rho family GTPase 1).
rnd1 Enables signaling receptor binding activity. Involved in actin filament organization; negative regulation of cell adhesion; and neuron remodeling. Located in several cellular components, including actin cytoskeleton; adherens junction; and plasma membrane.

NR:

description
rho-related GTP-binding protein Rho6

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07531 RND1; Rho family GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257870.3 True 4359 mRNA 0.44 5 4811162 4834117

Neighbor

gene id symbol gene type direction distance location
LOC103036708 cacnb3b,LOC103036708,LOC108432370,LOC107695823,LOC107570227,LOC108275626,LOC107668566 coding upstream 31242 4748328 ~ 4779920 (+)
LOC103036412 LOC108432361,LOC105418227 coding upstream 190194 4483609 ~ 4620968 (+)
LOC103035284 NA coding upstream 360703 4443426 ~ 4450459 (+)
phip phip coding upstream 371385 4379623 ~ 4439777 (+)
lca5 lca5 coding upstream 461794 4330504 ~ 4349368 (+)
LOC103037656 ptges3,ptges3a,LOC108433158,LOC107745455,LOC107570321,LOC107716195 coding downstream 53748 4887865 ~ 4893468 (+)
LOC103037977 LOC103037977,LOC108432382,LOC105897308,LOC103368323 coding downstream 67514 4901631 ~ 4905406 (+)
LOC111194057 NA coding downstream 392292 5226409 ~ 5234926 (+)
wnt1 wnt1,LOC107695811,LOC107563635 coding downstream 729948 5564065 ~ 5576733 (+)
lmbr1l lmbr1l,LOC107708860,LOC107716206,LOC107681941 coding downstream 796594 5630711 ~ 5670898 (+)
G129316 NA non-coding upstream 24999 4761667 ~ 4786163 (+)
G129301 LOC108433131 non-coding upstream 169193 4629985 ~ 4641969 (+)
LOC111194055 NA non-coding upstream 330800 4457847 ~ 4480362 (+)
G129275 NA non-coding upstream 501184 4307288 ~ 4309978 (+)
G129274 NA non-coding upstream 513258 4293807 ~ 4297904 (+)
G129435 NA non-coding downstream 230898 5065015 ~ 5078851 (+)
G129458 scn8aa,LOC108433193,LOC100304804 non-coding downstream 286169 5120286 ~ 5126142 (+)
G129480 NA non-coding downstream 408800 5242917 ~ 5290447 (+)
G129515 NA non-coding downstream 513501 5347618 ~ 5348189 (+)
G129518 NA non-coding downstream 518964 5353081 ~ 5353813 (+)
LOC103033446 LOC103033446,LOC107756391 other upstream 432495 4300199 ~ 4378667 (+)
hmgn3 hmgn3 other upstream 439281 4353083 ~ 4371881 (+)
LOC103028602 NA other upstream 1097601 3684923 ~ 3713561 (+)
LOC103029753 ormdl2,LOC103029753,LOC108276395,LOC107549034 other upstream 1149340 3655323 ~ 3661822 (+)
LOC103033013 NA other upstream 1275966 3516459 ~ 3535196 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other downstream 765161 5599278 ~ 5601461 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other downstream 2574879 7408996 ~ 7415078 (+)
G130119 NA other downstream 2634268 7468385 ~ 7472958 (+)
G130120 LOC107716234,LOC107681965 other downstream 2644238 7478355 ~ 7489241 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other downstream 2767488 7601605 ~ 7608883 (+)

Expression


Co-expression Network