LOC103044413


Basic Information

Item Value
gene id LOC103044413
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 6234196 ~ 6243566 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU175598
GAGAGTCCTGGCTGCGGTGATTGAGGGAGGAGctaagtttttaaatgaaggaaaCAAGATGGCGGCTTAAGGAGAGGTGACTGCTTTCATGTTGTGCTGTTGGGTTTTAATTGTGTTTGGTTGTGAGTCTCTTTTGTTAGAGCTGCTGTGTTTGGGTGTTTTATCTGCAAACCACCTACCTTTGttttaatatagatttaataaagCTGAGAAAGTGGTGCAGCGCTGAAGGACGTTATTTGCCTGCGTATTAGACTATTACAGGCTGACTCATCGGAGGGTACGGGATGAAAAAGGGCAACAACTGTTGGCGTCCCGCTGTGGGGCCTCTTCTGGAGCAGAGTGTGTGAAGAGGTTTAAAGAAAGAGAGTCAAAGCTCCTGTCATACAGGAAAGCAGGGGCAGAGCCAACTGCCCAGCAGACAAGCGTACCAAACTGGAGGTGGTGAAGAGAACTGAGCGAGAACCAACATCACCACATCTGAAAGAGAGCAAAGCAGGAATGTCTCCAGATTCTCTGATTCATTCGCGGATACTGTTTAATGAAGATGTGTGCAGTCCTGCAGTCTCCAGAAGATGCTTGACCTAGGAGAGATGTTTTGGCTCCTCCCCTTTGCTGACCTGGGAAAATATCCTGCATAGACACATCCGCTTTAGCTGTGTTCCAAAGTCTAGGCTGTAGTTGAGGTAGAGCGGGTCCTGTGAAGAGTCCTGCTCCATAGCCTGTGGGTTGCACATATGGAACAGTCTAACTGTGGTGATGTCTTGTGCAAACATCACATGATGACACTGAGGCACGAAATTCAGCCTACACTTTGGAACGCAGCTACTGACTGTTCTCTTGCTAGTACTGTTATATATTCATCATTCATTTTTGGGCAGCATTAGTGCTGGTTTGATTGATCTGTTTTTAGAGCATGTagcttttgtatattttttttcttatacttTCAGTTTATTAGTTTCtaaatttgtttgatttgtCTGATTTTGGCATGTATTCACTATATACAATTTCCCCATTTCTTGTGAATAAAATCATCCTGGTTTATTACATCAA
>TU175601
GAGAGTCCTGGCTGCGGTGATTGAGGGAGGAGctaagtttttaaatgaaggaaaCAAGATGGCGGCTTAAGGAGAGGTGACTGCTTTCATGTTGTGCTGTTGGGTTTTAATTGTGTTTGGTTGTGAGTCTCTTTTGTTAGAGCTGCTGTGTTTGGGTGTTTTATCTGCAAACCACCTACCTTTGttttaatatagatttaataaagCTGAGAAAGTGGTGCAGCGCTGAAGGACGTTATTTGCCTGCGTATTAGACTATTACAGGCTGACTCATCGGAGGGTACGGGATGAAAAAGGGCAACAACTGTTGGCGTCCCGCTGTGGGGCCTCTTCTGGAGCAGAGTGTGTGAAGAGGTTTAAAGAAAGAGAGTCAAAGCTCCTGTCATACAGGAAAGCAGGGGCAGAGCCAACTGCCCAGCAGACAAGCGTACCAAACTGGAGGTGGTGAAGAGAACTGAGCGAGAACCAACATCACCACATCTGAAAGAGAGCAAAGCAGCCTCAATCCATGTTAAATCAGTTTCTGCCCAAAGAAGACAACACTGTTTATGGATGGTTTTGACATTTGGCTTCTTCTTGAATGATACAGCTTTATCCTGCATGTCTGGATTTCACAGAATGTCTCCAGATTCTCTGATTCATTCGCGGATACTGTTTAATGAAGATGGTGGGATATTCAAAGCATTCACAGTTTTTACGAAATAGTGTTCCATTGTGAATACAATATGCATCTGTGAGTGTGCAGTCCTGCAGTCTCCAGAAGATGCTTGACCTAGGAGAGATGTTTTGGCTCCTCCCCTTTGCTGACCTGGGAAAATATCCTGCATAGACACATCCGCTTTAGCTGTGTTCCAAAGTCTAGGCTGTAGTTGAGGTAGAGCGGGTCCTGTGAAGAGTCCTGCTCCATAGCCTGTGGGTTGCACATATGGAACAGTCTAACTGTGGTGATGTCTTGTGCAAACATCACATGATGACACTGAGGCACGAAATTCAGCCTACACTTTGGAACGCAGCTACTGACTGTTCTCTTGCTAGTACTGTTATATATTCATCATTCATTTTTGGGCAGCATTAGTGCTGGTTTGATTGATCTGTTTTTAGAGCATGTagcttttgtatattttttttcttatacttTCAGTTTATTAGTTTCtaaatttgtttgatttgtCTGATTTTGGCATGTATTCACTATATACAATTTCCCCATTTCTTGTGAATAAAATCATCCTGGTTTATTACATCAA
>XR_001518639.2
TCTCTCCTGACCTGCTCTGGTTAGATGGAATTCAACCACCAATGAGAGTCCTGGCTGCGGTGATTGAGGGAGGAGctaagtttttaaatgaaggaaaCAAGATGGCGGCTTAAGGAGAGGTGACTGCTTTCATGTTGTGCTGTTGGGTTTTAATTGTGTTTGGTTGTGAGTCTCTTTTGTTAGAGCTGCTGTGTTTGGGTGTTTTATCTGCAAACCACCTACCTTTGttttaatatagatttaataaagCTGAGAAAGTGGTGCAGCGCTGAAGGACGTTATTTGCCTGCGTATTAGACTATTACAGGCTGACTCATCGGAGGGTACGGGATGAAAAAGGGCAACAACTGTTGGCGTCCCGCTGTGGGGCCTCTTCTGGAGCAGAGTGTGTGAAGAGGTTTAAAGAAAGAGAGTCAAAGCTCCTGTCATACAGGAAAGCAGGGGCAGAGCCAACTGCCCAGCAGACAAGCGTACCAAACTGGAGGTGGTGAAGAGAACTGAGCGAGAACCAACATCACCACATCTGAAAGAGAGCAAAGCAGGAATGTCTCCAGATTCTCTGATTCATTCGCGGATACTGTTTAATGAAGATGTGTGCAGTCCTGCAGTCTCCAGAAGATGCTTGACCTAGGAGAGATGTTTTGGCTCCTCCCCTTTGCTGACCTGGGAAAATATCCTGCATAGACACATCCGCTTTAGCTGTGTTCCAAAGTCTAGGCTGTAGTTGAGGTAGAGCGGGTCCTGTGAAGAGTCCTGCTCCATAGCCTGTGGGTTGCACATATGGAACAGTCTAACTGTGGTGATGTCTTGTGCAAACATCACATGATGACACTGAGGCACGAAATTCAGCCTACACTTTGGAACGCAGCTACTGACTGTTCTCTTGCTAGTACTGTTATATATTCATCATTCATTTTTGGGCAGCATTAGTGCTGGTTTGATTGATCTGTTTTTAGAGCATGTagcttttgtatattttttttcttatacttTCAGTTTATTAGTTTCtaaatttgtttgatttgtCTGATTTTGGCATGTATTCACTATATACAATTTCCCCATTTCTTGTGAA
>XR_002650860.1
TCTCTCCTGACCTGCTCTGGTTAGATGGAATTCAACCACCAATGAGAGTCCTGGCTGCGGTGATTGAGGGAGGAGctaagtttttaaatgaaggaaaCAAGATGGCGGCTTAAGGAGAGGTGACTGCTTTCATGTTGTGCTGTTGGGTTTTAATTGTGTTTGGTTGTGAGTCTCTTTTGTTAGAGCTGCTGTGTTTGGGTGTTTTATCTGCAAACCACCTACCTTTGttttaatatagatttaataaagCTGAGAAAGTGGTGCAGCGCTGAAGGACGTTATTTGCCTGCGTATTAGACTATTACAGGCTGACTCATCGGAGGGTACGGGATGAAAAAGGGCAACAACTGTTGGCGTCCCGCTGTGGGGCCTCTTCTGGAGCAGAGTGTGTGAAGAGGTTTAAAGAAAGAGAGTCAAAGCTCCTGTCATACAGGAAAGCAGGGGCAGAGCCAACTGCCCAGCAGACAAGCGTACCAAACTGGAGGTGGTGAAGAGAACTGAGCGAGAACCAACATCACCACATCTGAAAGAGAGCAAAGCAGGAATGTCTCCAGATTCTCTGATTCATTCGCGGATACTGTTTAATGAAGATGGTGGGATATTCAAAGCATTCACAGTTTTTACGAAATAGTGTTCCATTGTGAATACAATATGCATCTGTGAGTGTGCAGTCCTGCAGTCTCCAGAAGATGCTTGACCTAGGAGAGATGTTTTGGCTCCTCCCCTTTGCTGACCTGGGAAAATATCCTGCATAGACACATCCGCTTTAGCTGTGTTCCAAAGTCTAGGCTGTAGTTGAGGTAGAGCGGGTCCTGTGAAGAGTCCTGCTCCATAGCCTGTGGGTTGCACATATGGAACAGTCTAACTGTGGTGATGTCTTGTGCAAACATCACATGATGACACTGAGGCACGAAATTCAGCCTACACTTTGGAACGCAGCTACTGACTGTTCTCTTGCTAGTACTGTTATATATTCATCATTCATTTTTGGGCAGCATTAGTGCTGGTTTGATTGATCTGTTTTTAGAGCATGTagcttttgtatattttttttcttatacttTCAGTTTATTAGTTTCtaaatttgtttgatttgtCTGATTTTGGCATGTATTCACTATATACAATTTCCCCATTTCTTGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175598 False 1059 lncRNA 0.43 5 6234239 6243566
TU175601 True 1247 lncRNA 0.43 6 6234239 6243566
XR_001518639.2 False 1075 lncRNA 0.44 5 6234196 6243539
XR_002650860.1 False 1146 lncRNA 0.43 5 6234196 6243539

Neighbor

gene id symbol gene type direction distance location
LOC103043397 LOC108433435,LOC107708852 coding upstream 42177 6159261 ~ 6192019 (+)
LOC103043095 LOC103043095,LOC108433420,LOC108275531,LOC106567041,LOC105013543,LOC103368469 coding upstream 128520 6084857 ~ 6105676 (+)
LOC103043202 arhgef25,LOC108433408,LOC107570569 coding upstream 204928 5858922 ~ 6029268 (+)
kmt2d kmt2d,LOC108275851 coding upstream 491729 5698728 ~ 5742467 (+)
dhh dhh coding upstream 540080 5683908 ~ 5694116 (+)
LOC111194016 LOC108432442 coding downstream 205519 6449085 ~ 6455180 (+)
LOC103044924 zgc:153867,myl6,LOC107586536,LOC105897346,LOC107570608,LOC105013534,LOC103044924,LOC108433460,LOC106565518,LOC106567035 coding downstream 263996 6507562 ~ 6522363 (+)
huwe1 huwe1,LOC107586534 coding downstream 348038 6591604 ~ 6637739 (+)
LOC103043808 NA coding downstream 477584 6721150 ~ 6772944 (+)
smc1a smc1a,LOC107586531,LOC107716226,LOC107695786 coding downstream 544343 6787909 ~ 6809368 (+)
G129849 NA non-coding upstream 455 6233448 ~ 6233741 (+)
G129809 NA non-coding upstream 107837 6115836 ~ 6126359 (+)
G129657 NA non-coding upstream 199484 6032305 ~ 6034712 (+)
G129659 NA non-coding upstream 203064 5992529 ~ 6031132 (+)
G129680 NA non-coding upstream 317939 5915819 ~ 5916257 (+)
LOC111194059 NA non-coding downstream 305053 6548619 ~ 6584909 (+)
G129970 NA non-coding downstream 652930 6896496 ~ 6899641 (+)
LOC111194061 NA non-coding downstream 1110792 7354358 ~ 7400785 (+)
G130017 NA non-coding downstream 1172299 7415865 ~ 7419215 (+)
G130100 NA non-coding downstream 1177189 7420755 ~ 7420985 (+)
LOC103039794 RPS26,rps26l,rps26,LOC103039794,LOC108433306,LOC107708153,LOC100304574 other upstream 632735 5599278 ~ 5601461 (+)
LOC103033446 LOC103033446,LOC107756391 other upstream 1855529 4300199 ~ 4378667 (+)
hmgn3 hmgn3 other upstream 1862315 4353083 ~ 4371881 (+)
LOC103028602 NA other upstream 2520635 3684923 ~ 3713561 (+)
LOC103029753 ormdl2,LOC103029753,LOC108276395,LOC107549034 other upstream 2572374 3655323 ~ 3661822 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other downstream 1165430 7408996 ~ 7415078 (+)
G130119 NA other downstream 1224819 7468385 ~ 7472958 (+)
G130120 LOC107716234,LOC107681965 other downstream 1234789 7478355 ~ 7489241 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other downstream 1358039 7601605 ~ 7608883 (+)
LOC103037383 LOC103037383,LOC108432529 other downstream 1848165 8091731 ~ 8094054 (+)

Expression


Co-expression Network