G130447


Basic Information

Item Value
gene id G130447
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 8656307 ~ 8656745 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176413
cttaaaaatgatgagtttctttgattttaccaaattaaaaacctctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaccaaactgaactgcttgaatttttacaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatacatgaaaaaaaactgtgattaaaaaccaggattattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttgttatttcagtcatttctcattttctgtaaataaatgctctaaatgagaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176413 True 439 lncRNA 0.31 1 8656307 8656745

Neighbor

gene id symbol gene type direction distance location
fam43b fam43b,LOC107706957 coding upstream 55570 8598276 ~ 8600737 (+)
vwa5b1 vwa5b1,LOC107599492 coding upstream 96702 8531245 ~ 8559605 (+)
ubxn10 NA coding upstream 136537 8517797 ~ 8519770 (+)
LOC107197257 NA coding upstream 142037 8504473 ~ 8514270 (+)
LOC103036568 NA coding upstream 617857 8031533 ~ 8038450 (+)
LOC107197367 NA coding downstream 357 8657102 ~ 8662247 (+)
pink1 pink1,LOC107580618 coding downstream 10223 8666968 ~ 8672285 (+)
agmat agmat,LOC102790280 coding downstream 16155 8672900 ~ 8678108 (+)
iyd iyd coding downstream 36750 8693495 ~ 8697791 (+)
selenoi selenoi,si:ch211-197l9.4,LOC107656545,LOC107571075,LOC107708808,LOC107549067 coding downstream 41523 8698268 ~ 8707276 (+)
G130446 NA non-coding upstream 2536 8653291 ~ 8653771 (+)
G130417 NA non-coding upstream 73871 8579402 ~ 8582436 (+)
G130409 NA non-coding upstream 128065 8525961 ~ 8528242 (+)
G130384 NA non-coding upstream 166971 8488264 ~ 8489336 (+)
LOC111194065 NA non-coding upstream 515259 8098864 ~ 8141048 (+)
G130459 NA non-coding downstream 65062 8721807 ~ 8782569 (+)
G130470 ppp1r14c,LOC106608352 non-coding downstream 74961 8731706 ~ 8790268 (+)
G130461 NA non-coding downstream 178411 8835156 ~ 8836042 (+)
G130476 NA non-coding downstream 180019 8836764 ~ 8839125 (+)
G130478 NA non-coding downstream 183941 8840686 ~ 8856640 (+)
G130413 NA other upstream 91732 8563650 ~ 8564575 (+)
LOC103037383 LOC103037383,LOC108432529 other upstream 562253 8091731 ~ 8094054 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other upstream 1047424 7601605 ~ 7608883 (+)
G130120 LOC107716234,LOC107681965 other upstream 1167066 7478355 ~ 7489241 (+)
G130119 NA other upstream 1183349 7468385 ~ 7472958 (+)
cda LOC108416503,LOC108433378 other downstream 5998 8662743 ~ 8665819 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other downstream 196944 8853689 ~ 8870829 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other downstream 460425 9117170 ~ 9119782 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other downstream 475830 9132575 ~ 9193778 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other downstream 649409 9306154 ~ 9322080 (+)

Expression


Co-expression Network