G130409


Basic Information

Item Value
gene id G130409
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 8525961 ~ 8528242 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176353
GCAGCTCCTCGAACGTCTTGACGGAGTAAAGCGGTGAATTCGGATCCCTCTGTAGAATCTCCACTTTGAACGAGTTGTTCACAAGCTTGTTCCTGATTAATTTATTATGGAGTGATTGTGCAGCTTTGTCCtcttcttcttcttcttcgtcagATTTATTCTGGTCTTTTCCAGATTTTgccaaaaCACTGGTCACAGCCGGTCTCCTGCTGATCTGCAGCGTTTCCATCGTTCCGCAAGTCTCCTCCTGTTCATCAACACACAGCGCCCACGAGTCTGTGGCCATAATACCGTCCAATGACCCTAAAATACTGTCGAATGATCCTAAAGTCCTAAAATTGAACTTATATCACTTTAATTCAGGCAGATTTCCCCCGCGCGCGCTCCCTCAGCATCAAACTCGCGTTAAACCGGGTCGTGCTCGGGCTTCTGCTGCCCGGACTGAACCCGCGACCCCCCAAACAATCAGTTCCCCCCCCCTGGCCTCAACACTCAGTCCCCCCCCACCGGCCTCAATACAACCCCAAGAACTGGCTCTGGTTCCACATGATCTTTGGTACTTGACCAGAATAATACCTAATTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176353 True 584 lncRNA 0.50 4 8525961 8528242

Neighbor

gene id symbol gene type direction distance location
ubxn10 NA coding upstream 6191 8517797 ~ 8519770 (+)
LOC107197257 NA coding upstream 11691 8504473 ~ 8514270 (+)
LOC103036568 NA coding upstream 487511 8031533 ~ 8038450 (+)
LOC103035729 dvl1,dvl1a,LOC107708824,LOC107570850 coding upstream 506839 7949837 ~ 8019122 (+)
LOC103036256 mxra8 coding upstream 579298 7923863 ~ 7946663 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 3003 8531245 ~ 8559605 (+)
fam43b fam43b,LOC107706957 coding downstream 70034 8598276 ~ 8600737 (+)
LOC107197367 NA coding downstream 128860 8657102 ~ 8662247 (+)
pink1 pink1,LOC107580618 coding downstream 138726 8666968 ~ 8672285 (+)
agmat agmat,LOC102790280 coding downstream 144658 8672900 ~ 8678108 (+)
G130384 NA non-coding upstream 36625 8488264 ~ 8489336 (+)
LOC111194065 NA non-coding upstream 384913 8098864 ~ 8141048 (+)
G130255 NA non-coding upstream 470477 8053027 ~ 8055484 (+)
G130214 NA non-coding upstream 642520 7882041 ~ 7883441 (+)
LOC111194064 NA non-coding upstream 733817 7742944 ~ 7792144 (+)
G130417 NA non-coding downstream 51160 8579402 ~ 8582436 (+)
G130446 NA non-coding downstream 125049 8653291 ~ 8653771 (+)
G130447 NA non-coding downstream 128065 8656307 ~ 8656745 (+)
G130459 NA non-coding downstream 193565 8721807 ~ 8782569 (+)
G130470 ppp1r14c,LOC106608352 non-coding downstream 203464 8731706 ~ 8790268 (+)
LOC103037383 LOC103037383,LOC108432529 other upstream 431907 8091731 ~ 8094054 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other upstream 917078 7601605 ~ 7608883 (+)
G130120 LOC107716234,LOC107681965 other upstream 1036720 7478355 ~ 7489241 (+)
G130119 NA other upstream 1053003 7468385 ~ 7472958 (+)
tardbp tardbp,tardbpl,LOC107570713,LOC107586522,LOC107716231,LOC107681961,LOC107695779,LOC107708842 other upstream 1110883 7408996 ~ 7415078 (+)
G130413 NA other downstream 35408 8563650 ~ 8564575 (+)
cda LOC108416503,LOC108433378 other downstream 134501 8662743 ~ 8665819 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other downstream 325447 8853689 ~ 8870829 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other downstream 588928 9117170 ~ 9119782 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other downstream 604333 9132575 ~ 9193778 (+)

Expression


Co-expression Network