G130462


Basic Information

Item Value
gene id G130462
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 8926712 ~ 9001690 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176439
CTAGATGAACTTCACATCTGTGGATTCATAAGACTTATAATAGGAGGATCATATTCCAGTTTTAACCACAAGTAAGCTCTGTAAGTGTACGCTGTCAGCCAGAGAAAACTGCTGCTGCAAATATACCCACAATGTAAACTCATCATCATACGACTCAAAAATAACCCGGACAAAAACCACAGCCACGTGGCTCAGTGTAGTACATCGTATTTAAGAGACTGACagctccatatatatatataaatacagctccggactaaaatgaagagagcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattcttatttagagcatttatttacagaaaatgagaaatgtctgaaataacaaaaaagatgcagaactttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaatcaatatttgactccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggtttaaaaTTTTGCAAAAtccaagaaactcataattttatatgctctcttatttttttccagagctgtagaggtaaacaaaacaaaataataattattataataaaggtTGAGGTTTCTACCTGCTCTATTCAACCTCCATTCTAAATGGATTAGGTTGGATTTGCTGTGTTGAAGGGAAACTCCAGTGATTTCCAGCTTGACTGTTCTCTGCAGCACATGGTCAGTTATATGGTCTGTGGGTGTGAGAATGATTTCTGGTTGCTAAAGTCGTTAGAGTCACACGGACGATTCTAACCAGATGcagccggtcacgatcattaccatccactgcgCTGTCCCTATGGTCCATATGCGCTGTCTATAATGTCTGTTTTTTATGGCGTTTCTCCAGTACACATTTGATTCTGTGGAAAATGGACAAATTCAGAAATGGAAAGTCCCATCCAGCTGACACAGATCCAGTGCTGAGATCAGGTTGAAAAACACTGGAGTATTCCTTTAAAGAAGGAAAACCTTGTGTGACCATGACGTGATGTTTTCCTCTTCAGACCAGGCAGTTGTACATCACCTTATTTCAGCACATCATCTGTTAAGATGGTAAGATTTTAAAAGAAGCTCTTGAGAAGTGTAGAGATCGTTTCTTCTAAAAGGTTTGCTCCAAAATGCTTTACATTATTATTCTTATCTTCTTGATCAGAACACCTGCAGTACTTTTTGCAGTTGATGAGCGTGGATGGAATAGAACTTGCTAAAACATACTAGAACATGCTCTACTGTTTTTAAGGTGTTCTAGATGCTCCTTTTTCCCCCGCACTGAATGGTTTTAATcgaaatactgaataattcggTCATTAATGTGTAAAGCTCTTTCCCGATggtattagtttctcagggggttctgggtaattttctctcttttatggggtttttatcctctgtgattttattcctgtccagaacaatCATgttcgtgtttttctcagacgtcctctgagaaaattacaggctgaattatctactgtttttctctgaactccgtgctcctccggtatttttagtcccgtccggacgcacatctctgagtttcgtctcctcgcctttaataaaataataaaatagctatttgtccactgccgtgcagcgtaattacactttgggcgtgccatggtttccatggagatccatgttaaaaaaaaaaaacaacagcgagtagaaatggaggagctactgaacgcctaaaactcactggtcctcctgttttttcaattacagtccggatgcaggggttttatcactaaagactagaagtgtgaaatatttttcacagacttccccctgagaaactaatcctgtctggatgGGGCTTAAGGAAAcacagtaattcagtaattctgggtttggtgtgaaatggtgaATTGTTTTAGTTGAGTAACTTATCAACTGTGGTTTCTTTAGTGGTGATGATCAGACTTAGGGTTCTAGATGGTTCAttcatcctaaaaaaaaaataataatagtgcaAGAGCCCTTTTGTTTGGTagcttttaaactttaaactttgttttgaaGGCTGTCTGGTACCACTGCTAAGAGATGGatcatttcacaccaaactgCTGTAAATTAAATTCTGAATACTTTTACAAATTAATGGCTGAGTTATAAGGAtctgttagatttttttcttaagcAGGATCCAGTGCACATGAAGGTAAGGTGCTTCtcctaaaatgtttaattacagGTTTTATATCAGGTAGTTTAAGATTAGCAGTTTAGAAGGTTGTTTCAAGTACAAATGGTGTACTTTAACCTCATGGCTGCAGCCAATCCAGTTctactttaaaggagaaatccagagtgaaatggacttgggttgtagtaaaATATTATGAGAACTAATATTTGTTTAGAATAGCCCTCCAGCCCTCTGTTATcccccagcattcccaaatacagagcttttagcagAAGCTCCCAGCTAACATGCTTACAGTGCTAGTGATTGGGGCATAGAGCCTTGGCTAACAGCGCTGTATTTAGGAACGCTGGAGGAGAATGGAGGTGgaatatttaataaaagtttgtactctttataacattttactgcaacccaagtccatttcacactgaatttcttctttaaaatgtgattattgGTACCTGGATTCTGATTTATTTCAggcatctctctttctctcgtctGGAATTTCATAAATGAATCTCATCCTATTAGACCATCCAACACTATGATTTgttctgttgtgtgtgtatttgtgggATGTTCACTACTGCTTTCACTTTTACAGCACAGTACGTCATTAGACACAGAACTgggttattttttgttttggtttatttttttttctgcttttcgaGGGTTGTGACTTGTGCAATATTCTTCAACAGACTtaaataaacattcatttaatTCTCTTCTTA

Function

GO:

id name namespace
GO:0035845 photoreceptor cell outer segment organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176439 True 3113 lncRNA 0.37 2 8926712 9001690

Neighbor

gene id symbol gene type direction distance location
ints11 cpsf3l coding upstream 26504 8888518 ~ 8900208 (+)
LOC103046732 NA coding upstream 49159 8876271 ~ 8877553 (+)
LOC111194070 LOC108435580,LOC108275533 coding upstream 93306 8816007 ~ 8833406 (+)
LOC103025127 NA coding upstream 113351 8801192 ~ 8813361 (+)
LOC103025429 egr4,LOC108435548,LOC107734701 coding upstream 128512 8794999 ~ 8798200 (+)
LOC103023558 LOC108433383 coding downstream 640 9002330 ~ 9017541 (+)
LOC103022619 LOC108433387,LOC108275864 coding downstream 65562 9067252 ~ 9097299 (+)
zbtb39 zbtb39 coding downstream 97802 9099492 ~ 9107285 (+)
LOC103043576 NA coding downstream 218944 9220634 ~ 9224711 (+)
csad csad,LOC107697858,LOC107599458,LOC107706996 coding downstream 228840 9230530 ~ 9242781 (+)
G130468 NA non-coding upstream 23639 8882937 ~ 8903073 (+)
G130478 NA non-coding upstream 70072 8840686 ~ 8856640 (+)
G130476 NA non-coding upstream 87587 8836764 ~ 8839125 (+)
G130461 NA non-coding upstream 90670 8835156 ~ 8836042 (+)
G130470 ppp1r14c,LOC106608352 non-coding upstream 136444 8731706 ~ 8790268 (+)
G130500 NA non-coding downstream 26355 9028045 ~ 9031375 (+)
G130504 LOC108433385 non-coding downstream 40429 9042119 ~ 9044107 (+)
G130505 NA non-coding downstream 42496 9044186 ~ 9044552 (+)
G130496 NA non-coding downstream 49145 9050835 ~ 9051369 (+)
G130497 NA non-coding downstream 50013 9051703 ~ 9054909 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other upstream 55883 8853689 ~ 8870829 (+)
cda LOC108416503,LOC108433378 other upstream 260893 8662743 ~ 8665819 (+)
G130413 NA other upstream 362137 8563650 ~ 8564575 (+)
LOC103037383 LOC103037383,LOC108432529 other upstream 832658 8091731 ~ 8094054 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other upstream 1317829 7601605 ~ 7608883 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other downstream 115480 9117170 ~ 9119782 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other downstream 130885 9132575 ~ 9193778 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other downstream 304464 9306154 ~ 9322080 (+)
G130844 NA other downstream 755262 9756952 ~ 9757351 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other downstream 854716 9856406 ~ 9871772 (+)

Expression


Co-expression Network