G130496


Basic Information

Item Value
gene id G130496
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9050835 ~ 9051369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176491
AAGATGTTTTAAttggaaaaacaaaaagtttcaaaaatacaacaaaagtccaGAAGAGGGTGCAGGGGTGCATACAGAGTTCCAATAGTTTGGACATGGCTTGCTCTGAAGTTAAATAACTAGTTAAACGTTTACACAACtgcaatattttaataagaGGAATGGAAATACCTTGTCAGAACACACAGTACCAGTAATAATAGAGTAACGACAATTCAATTCAGTGCATCTTTATCGTAAGTAACATGAGATTTCAAGCTTTTAAAATCTAGACTTGAAACAAAAGCATCCACCACACAGTGGATAATTCTGCACGGCTAGAAATTCACCCGGATTAAAGCATGTAGGAGAATTTAGGAGGCAAAAATGGGTGAATAAAATGCTAACTAAATAAAggcaaaacagagagagagagagatcgatTCGATTAGAAATTCATGACTAcctacattacaatacatacaaacaaataacttATCTTTCTTATGGGCAGAAAATgatttaacaaacaaaaagaatggCAACAATACTTTGA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU176491 True 535 lncRNA 0.34 1 9050835 9051369

Neighbor

gene id symbol gene type direction distance location
LOC103023558 LOC108433383 coding upstream 33294 9002330 ~ 9017541 (+)
ube2j2 ube2j2,LOC108411519,LOC107697915,LOC107706988,LOC107599097,LOC107664234,LOC107593951 coding upstream 52098 8993811 ~ 8998737 (+)
LOC103023874 acap3,LOC107706985,LOC107664201,LOC107697914,LOC103359731 coding upstream 57747 8920681 ~ 8993088 (+)
ints11 cpsf3l coding upstream 150627 8888518 ~ 8900208 (+)
LOC103046732 NA coding upstream 173282 8876271 ~ 8877553 (+)
LOC103022619 LOC108433387,LOC108275864 coding downstream 15883 9067252 ~ 9097299 (+)
zbtb39 zbtb39 coding downstream 48123 9099492 ~ 9107285 (+)
LOC103043576 NA coding downstream 169265 9220634 ~ 9224711 (+)
csad csad,LOC107697858,LOC107599458,LOC107706996 coding downstream 179161 9230530 ~ 9242781 (+)
znf740 znf740 coding downstream 194103 9245472 ~ 9253071 (+)
G130505 NA non-coding upstream 6283 9044186 ~ 9044552 (+)
G130504 LOC108433385 non-coding upstream 6728 9042119 ~ 9044107 (+)
G130500 NA non-coding upstream 19460 9028045 ~ 9031375 (+)
G130462 NA non-coding upstream 49145 8926712 ~ 9001690 (+)
G130468 NA non-coding upstream 147762 8882937 ~ 8903073 (+)
G130497 NA non-coding downstream 334 9051703 ~ 9054909 (+)
G130511 NA non-coding downstream 20440 9071809 ~ 9147665 (+)
G130494 NA non-coding downstream 28227 9079596 ~ 9108685 (+)
G130527 NA non-coding downstream 94121 9145490 ~ 9145843 (+)
G130495 NA non-coding downstream 110109 9161478 ~ 9166618 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other upstream 180006 8853689 ~ 8870829 (+)
cda LOC108416503,LOC108433378 other upstream 385016 8662743 ~ 8665819 (+)
G130413 NA other upstream 486260 8563650 ~ 8564575 (+)
LOC103037383 LOC103037383,LOC108432529 other upstream 956781 8091731 ~ 8094054 (+)
lzic lzic,LOC107708836,LOC107681991,LOC107718820 other upstream 1441952 7601605 ~ 7608883 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other downstream 65801 9117170 ~ 9119782 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other downstream 81206 9132575 ~ 9193778 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other downstream 254785 9306154 ~ 9322080 (+)
G130844 NA other downstream 705583 9756952 ~ 9757351 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other downstream 805037 9856406 ~ 9871772 (+)

Expression


Co-expression Network