znf740 (znf740)


Basic Information

Item Value
gene id znf740
gene name znf740
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9245472 ~ 9253071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677064.1
CCCTGAGAGCACTTCCGGTAGCGTTTCCTGTGTTTGTAAACTGGAGGAGAAGCTGCGGGGAGGAGAAAGAGCAGAGCGCGGAGAGCGGAGAGCAGgcttccccccccccccgatgATTGTGGCTTGTGTGGTATCTGTTCATTCTCTCTGCCCAGTGCGACGCTTTCTGTCCCCCACCCCACGCACACACTCCCATTACTGCGATGTCACATCTTTCCAGCAACTCAGTCCGAGAGCACATGAAATGGgCTGGGTTGCTGGGCTGTGAGGCGGTGCTCTCCAGTATGGCTCTCATGCAGGCCAACTCCGCCCCCAGCCATAAGAAGATGCCCACCCCTCTGAGCCAGGGGCAGAGAGACCACCACAGCCACGGGCACAACCACAACCAGAACCACAGCCAGGATGCCCACAGTCACCACAGCCACATGATGCTGCCCTCTGGAGTCAGCTGCCCACCAATGCTCATTAATAAGGACGGAGCGTTCCACTCTTCCAGGCTGCTGGAGGAGAAGGACATGCAGTCCAGCCAGAACCTGCAGCCAAAGAAGAAGAACAGGAAGACAGGAACGCCCAccaaagtgagagaaaaagccCAGGTTCAGATGCCCGATCCCAGCGACGACAGTTCCCTCAGCTCTCAGGTGCAGAAGAACTTTATCTGTGAGCACTGCTACGGAGCTTTCCGCAGTAGCTACCACCTGAAACGCCATATTCTCACCCACACAGgagagaAGCCGTTCgggtgtgatgtgtgtgataTGAGGTTTATTCAGCGTTATCACCTGGAGAGACACAAACGAGTTCACAGCGGAGAGAAACCCTATCAGTGTGATCGCTGTCAGCagaACTTCTCGCGGACGGACCGGCTGCTGCGGCACCGGCGGCTGTGTGCCGTGGGCGTCGCCAAGGAGGAGAACCAGTCCTGCTGCGAGGGCCGGCCGTACCCGCAGGACCCGCCCCAGCACACCGCGTCCTGGAGCCCCCTACAGGccaacagcagcaacagccGGCTGGCTGTGTGACGCCTCTGCGTTCCAGCGGAAACCTCTTATCAGCCAGCTCAGTGGGAGGAGAGTGGACTCAGAGCAGCCACACGGGGGCGCTATACTGTGCCGGACTGACCCCGGGCAAAGACTCCTGCGCCTCCAGATCCCAAACCAAACCAGGTCAAAGTTCATCCGCAGACGGTGAAAAGTGTTCTTTTGATTCGTAAAACTGATAAAACTGATGTGACCTGAGCGGAGAGGATccttttatattgttattttactgTAGATGGTCGTGACCCTGCCGGGGGTGGGAGTAGATCGTTAAACTGCACAGGCAATAATGAGTTCAGTTAGAAAGTAGAGAATCAGACAGTGACTCGGACGggattattactactactattgttattaatactactgctttcTTTTATAGTATGACG
>XM_022677065.1
GCCCTGAGAGCACTTCCGGTAGCGTTTCCTGTGTTTGTAAACTGGAGGAGAAGCTGCGGGGAGGAGAAAGAGCAGAGCGCGGAGAGCGGAGAGCAGgcttccccccccccccgatgATTGTGGCTTGTGTGGTATCTGTTCATTCTCTCTGCCCAGTGCGACGCTTTCTGTCCCCCACCCCACGCACACACTCCCATTACTGCGATGTCACATCTTTCCAGCAACTCAGTCCGAGAGCACATGAAATGGgCTGGGTTGCTGGGCTGTGAGGCGGTGCTCTCCAGTATGGCTCTCATGCAGGCCAACTCCGCCCCCAGCCATAAGAAGATGCCCACCCCTCTGAGCCAGGGGCAGAGAGACCACCACAGCCACGGGCACAACCACAACCAGAACCACAGCCAGGATGCCCACAGTCACCACAGCCACATGATGCTGCCCTCTGGAGTCAGCTGCCCACCAATGCTCATTAATAAGGACGGAGCGTTCCACTCTTCCAGGCTGCTGGAGGAGAAGGACATGCAGTCCAGCCAGAACCTGCAGCCAAAGAAGAAGAACAGGAAGACAGGAACGCCCAccaaaGTTCAGATGCCCGATCCCAGCGACGACAGTTCCCTCAGCTCTCAGGTGCAGAAGAACTTTATCTGTGAGCACTGCTACGGAGCTTTCCGCAGTAGCTACCACCTGAAACGCCATATTCTCACCCACACAGgagagaAGCCGTTCgggtgtgatgtgtgtgataTGAGGTTTATTCAGCGTTATCACCTGGAGAGACACAAACGAGTTCACAGCGGAGAGAAACCCTATCAGTGTGATCGCTGTCAGCagaACTTCTCGCGGACGGACCGGCTGCTGCGGCACCGGCGGCTGTGTGCCGTGGGCGTCGCCAAGGAGGAGAACCAGTCCTGCTGCGAGGGCCGGCCGTACCCGCAGGACCCGCCCCAGCACACCGCGTCCTGGAGCCCCCTACAGGccaacagcagcaacagccGGCTGGCTGTGTGACGCCTCTGCGTTCCAGCGGAAACCTCTTATCAGCCAGCTCAGTGGGAGGAGAGTGGACTCAGAGCAGCCACACGGGGGCGCTATACTGTGCCGGACTGACCCCGGGCAAAGACTCCTGCGCCTCCAGATCCCAAACCAAACCAGGTCAAAGTTCATCCGCAGACGGTGAAAAGTGTTCTTTTGATTCGTAAAACTGATAAAACTGATGTGACCTGAGCGGAGAGGATccttttatattgttattttactgTAGATGGTCGTGACCCTGCCGGGGGTGGGAGTAGATCGTTAAACTGCACAGGCAATAATGAGTTCAGTTAGAAAGTAGAGAATCAGACAGTGACTCGGACGggattattactactactattgttattaatactactgctttcTTTTATAGTATGACG
>XM_022677066.1
GCGCTGCCCTGAGAGCACTTCCGGTAGCGTTTCCTGTGTTTGTAAACTGGAGGAGAAGCTGCGGGGAGGAGAAAGAGCAGAGCGCGGAGAGCGGAGAGCAGgCTGGGTTGCTGGGCTGTGAGGCGGTGCTCTCCAGTATGGCTCTCATGCAGGCCAACTCCGCCCCCAGCCATAAGAAGATGCCCACCCCTCTGAGCCAGGGGCAGAGAGACCACCACAGCCACGGGCACAACCACAACCAGAACCACAGCCAGGATGCCCACAGTCACCACAGCCACATGATGCTGCCCTCTGGAGTCAGCTGCCCACCAATGCTCATTAATAAGGACGGAGCGTTCCACTCTTCCAGGCTGCTGGAGGAGAAGGACATGCAGTCCAGCCAGAACCTGCAGCCAAAGAAGAAGAACAGGAAGACAGGAACGCCCAccaaagtgagagaaaaagccCAGGTTCAGATGCCCGATCCCAGCGACGACAGTTCCCTCAGCTCTCAGGTGCAGAAGAACTTTATCTGTGAGCACTGCTACGGAGCTTTCCGCAGTAGCTACCACCTGAAACGCCATATTCTCACCCACACAGgagagaAGCCGTTCgggtgtgatgtgtgtgataTGAGGTTTATTCAGCGTTATCACCTGGAGAGACACAAACGAGTTCACAGCGGAGAGAAACCCTATCAGTGTGATCGCTGTCAGCagaACTTCTCGCGGACGGACCGGCTGCTGCGGCACCGGCGGCTGTGTGCCGTGGGCGTCGCCAAGGAGGAGAACCAGTCCTGCTGCGAGGGCCGGCCGTACCCGCAGGACCCGCCCCAGCACACCGCGTCCTGGAGCCCCCTACAGGccaacagcagcaacagccGGCTGGCTGTGTGACGCCTCTGCGTTCCAGCGGAAACCTCTTATCAGCCAGCTCAGTGGGAGGAGAGTGGACTCAGAGCAGCCACACGGGGGCGCTATACTGTGCCGGACTGACCCCGGGCAAAGACTCCTGCGCCTCCAGATCCCAAACCAAACCAGGTCAAAGTTCATCCGCAGACGGTGAAAAGTGTTCTTTTGATTCGTAAAACTGATAAAACTGATGTGACCTGAGCGGAGAGGATccttttatattgttattttactgTAGATGGTCGTGACCCTGCCGGGGGTGGGAGTAGATCGTTAAACTGCACAGGCAATAATGAGTTCAGTTAGAAAGTAGAGAATCAGACAGTGACTCGGACGggattattactactactattgttattaatactactgctttcTTTTATAGTATGACG

Function

symbol description
znf740 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: zinc finger protein 740 isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677064.1 True 1429 mRNA 0.56 7 9245478 9253071
XM_022677065.1 False 1412 mRNA 0.56 7 9245477 9253071
XM_022677066.1 False 1282 mRNA 0.56 6 9245472 9253071

Neighbor

gene id symbol gene type direction distance location
csad csad,LOC107697858,LOC107599458,LOC107706996 coding upstream 2691 9230530 ~ 9242781 (+)
LOC103043576 NA coding upstream 20761 9220634 ~ 9224711 (+)
zbtb39 zbtb39 coding upstream 138187 9099492 ~ 9107285 (+)
LOC103022619 LOC108433387,LOC108275864 coding upstream 148173 9067252 ~ 9097299 (+)
LOC103023558 LOC108433383 coding upstream 227931 9002330 ~ 9017541 (+)
cbx5 cbx5,LOC103047453,LOC107664188,LOC107707003,LOC107714996 coding downstream 69610 9322681 ~ 9332418 (+)
LOC111194074 calcoco1a,LOC108433409 coding downstream 365287 9618358 ~ 9645766 (+)
LOC103044467 LOC108433411,LOC108276259 coding downstream 521039 9774110 ~ 9793416 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding downstream 543120 9796191 ~ 9798893 (+)
LOC103043867 LOC108433414,LOC104967021,LOC106572606 coding downstream 569561 9822632 ~ 9846742 (+)
G130538 NA non-coding upstream 16380 9228499 ~ 9229092 (+)
G130495 NA non-coding upstream 78854 9161478 ~ 9166618 (+)
G130511 NA non-coding upstream 97807 9071809 ~ 9147665 (+)
G130547 NA non-coding downstream 14896 9267967 ~ 9338361 (+)
G130540 NA non-coding downstream 26364 9279435 ~ 9279813 (+)
G130553 NA non-coding downstream 33206 9286277 ~ 9334135 (+)
G130559 NA non-coding downstream 129872 9382943 ~ 9383194 (+)
G130758 hoxc4,LOC103034018,LOC108433407 non-coding downstream 218545 9471616 ~ 9474358 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other upstream 51694 9132575 ~ 9193778 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other upstream 125690 9117170 ~ 9119782 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other upstream 374643 8853689 ~ 8870829 (+)
cda LOC108416503,LOC108433378 other upstream 579653 8662743 ~ 8665819 (+)
G130413 NA other upstream 680897 8563650 ~ 8564575 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other downstream 53083 9306154 ~ 9322080 (+)
G130844 NA other downstream 503881 9756952 ~ 9757351 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other downstream 603335 9856406 ~ 9871772 (+)
mlh3 mlh3,LOC107591079 other downstream 658236 9911307 ~ 9920995 (+)
LOC103038829 NA other downstream 669910 9922981 ~ 9928233 (+)

Expression


Co-expression Network