G130540


Basic Information

Item Value
gene id G130540
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9279435 ~ 9279813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176547
CATAAGGAAACAGTGGGTTTTATTTCAGGATTACAGGATGGGTTTGGGCGGCCGGACCACTGGAATGTACATGAATCACATTCACTGTTCACACTGTGTTTCTCATACAGCGCGgatatctatctctctcacacacaaacacactcaaccCCAACCGGAATGGAATAATCAGAAAGTCCCTGGTACTTTTCCTTAAAGGGCAagttcaccaaaaaaaaataaaacaaaacaagaaaaacaaaaaaaacagaataataacCGGCTCTTTATTTACTGAACCACTGGAAGAAAAGAGGAACTGGCTCTGATCCAGTGGTAAAACACTTTAACACACCTGACTTTACctgaaaatacatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176547 True 357 lncRNA 0.39 2 9279435 9279813

Neighbor

gene id symbol gene type direction distance location
znf740 znf740 coding upstream 26364 9245472 ~ 9253071 (+)
csad csad,LOC107697858,LOC107599458,LOC107706996 coding upstream 36654 9230530 ~ 9242781 (+)
LOC103043576 NA coding upstream 54724 9220634 ~ 9224711 (+)
zbtb39 zbtb39 coding upstream 172150 9099492 ~ 9107285 (+)
LOC103022619 LOC108433387,LOC108275864 coding upstream 182136 9067252 ~ 9097299 (+)
cbx5 cbx5,LOC103047453,LOC107664188,LOC107707003,LOC107714996 coding downstream 42868 9322681 ~ 9332418 (+)
LOC111194074 calcoco1a,LOC108433409 coding downstream 338545 9618358 ~ 9645766 (+)
LOC103044467 LOC108433411,LOC108276259 coding downstream 494297 9774110 ~ 9793416 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding downstream 516378 9796191 ~ 9798893 (+)
LOC103043867 LOC108433414,LOC104967021,LOC106572606 coding downstream 542819 9822632 ~ 9846742 (+)
G130538 NA non-coding upstream 50343 9228499 ~ 9229092 (+)
G130495 NA non-coding upstream 112817 9161478 ~ 9166618 (+)
G130511 NA non-coding upstream 131770 9071809 ~ 9147665 (+)
G130553 NA non-coding downstream 6464 9286277 ~ 9334135 (+)
G130559 NA non-coding downstream 103130 9382943 ~ 9383194 (+)
G130758 hoxc4,LOC103034018,LOC108433407 non-coding downstream 191803 9471616 ~ 9474358 (+)
G130762 NA non-coding downstream 203508 9483321 ~ 9483528 (+)
G130763 hoxc6,hoxc6aa,LOC103034651,LOC108433405,LOC105013626 non-coding downstream 208713 9488526 ~ 9489598 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other upstream 85657 9132575 ~ 9193778 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other upstream 159653 9117170 ~ 9119782 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other upstream 408606 8853689 ~ 8870829 (+)
cda LOC108416503,LOC108433378 other upstream 613616 8662743 ~ 8665819 (+)
G130413 NA other upstream 714860 8563650 ~ 8564575 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other downstream 26341 9306154 ~ 9322080 (+)
G130844 NA other downstream 477139 9756952 ~ 9757351 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other downstream 576593 9856406 ~ 9871772 (+)
mlh3 mlh3,LOC107591079 other downstream 631494 9911307 ~ 9920995 (+)
LOC103038829 NA other downstream 643168 9922981 ~ 9928233 (+)

Expression


Co-expression Network