RNA id: TU176547


Basic Information

Item Value
RNA id TU176547
length 357
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G130540
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9279435 ~ 9279813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAAGGAAACAGTGGGTTTTATTTCAGGATTACAGGATGGGTTTGGGCGGCCGGACCACTGGAATGTACATGAATCACATTCACTGTTCACACTGTGTTTCTCATACAGCGCGgatatctatctctctcacacacaaacacactcaaccCCAACCGGAATGGAATAATCAGAAAGTCCCTGGTACTTTTCCTTAAAGGGCAagttcaccaaaaaaaaataaaacaaaacaagaaaaacaaaaaaaacagaataataacCGGCTCTTTATTTACTGAACCACTGGAAGAAAAGAGGAACTGGCTCTGATCCAGTGGTAAAACACTTTAACACACCTGACTTTACctgaaaatacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176540 lncRNA upstream 50343 9228499 ~ 9229092 (+) True G130538
TU176514 lncRNA upstream 85661 9193450 ~ 9193774 (+) False spryd3
TU176512 lncRNA upstream 86582 9192027 ~ 9192853 (+) False spryd3
TU176490 lncRNA upstream 112817 9161478 ~ 9166618 (+) True G130495
TU176528 lncRNA upstream 133592 9145490 ~ 9145843 (+) True G130527
TU176564 lncRNA downstream 6464 9286277 ~ 9334135 (+) True G130553
TU176570 lncRNA downstream 103130 9382943 ~ 9383194 (+) True G130559
TU176816 lncRNA downstream 191803 9471616 ~ 9474358 (+) True G130758
TU176820 lncRNA downstream 203508 9483321 ~ 9483528 (+) True G130762
TU176821 lncRNA downstream 208713 9488526 ~ 9489598 (+) True G130763
XM_022677066.1 mRNA upstream 26364 9245472 ~ 9253071 (+) False znf740
XM_022677065.1 mRNA upstream 26364 9245477 ~ 9253071 (+) False znf740
XM_022677064.1 mRNA upstream 26364 9245478 ~ 9253071 (+) True znf740
XM_022677063.1 mRNA upstream 36654 9230530 ~ 9242781 (+) True csad
XM_022677062.1 mRNA upstream 54724 9220642 ~ 9224711 (+) False LOC103043576
XM_007242257.3 mRNA downstream 26341 9306154 ~ 9316293 (+) True nfe2
XM_007242258.3 mRNA downstream 42868 9322681 ~ 9332418 (+) False cbx5
XM_007242259.2 mRNA downstream 42869 9322682 ~ 9332418 (+) True cbx5
XM_022677072.1 mRNA downstream 338545 9618358 ~ 9645766 (+) True LOC111194074
XM_022677073.1 mRNA downstream 347196 9627009 ~ 9645766 (+) False LOC111194074
TU176519 other upstream 159653 9117170 ~ 9119782 (+) True G130518
TU176443 other upstream 420765 8853694 ~ 8858670 (+) False LOC103024807
TU176364 other upstream 714860 8563650 ~ 8564575 (+) True G130413
TU176159 other upstream 1185382 8092984 ~ 8094053 (+) False LOC103037383
XR_002650868.1 other upstream 1670552 7601605 ~ 7608883 (+) False lzic
TU176541 other downstream 36425 9316238 ~ 9322080 (+) False nfe2
TU176542 other downstream 36425 9316238 ~ 9319575 (+) False nfe2
TU176928 other downstream 477139 9756952 ~ 9757351 (+) True G130844
TU176943 other downstream 576593 9856406 ~ 9871591 (+) False LOC111194075
XR_002650874.1 other downstream 588275 9868088 ~ 9871772 (+) True LOC111194075

Expression Profile