RNA id: TU176564


Basic Information

Item Value
RNA id TU176564
length 1104
lncRNA type read_through
GC content 0.34
exon number 2
gene id G130553
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9286277 ~ 9334135 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggtttttaatcacagtttttttttcatgcatcttgtcatcatgttctcctccaccagtcttgcacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggtttttaattcggtaaaatcaaagaaactcgtcagttttaagtgctctcttattttatttttattattttttttccagagctgtatattcagtaGGTCTCAACACGTAAAGACAGTGTTCGCTTTTCCAGCAGATGGTGCTATTCTACTATGCTCTGTTTATAAACTTGACTCTCTGTCTCAGTGCAGCCCATAATACGGCACAGAACGGTCCTGATTTAAGTGGaatttgttaatttgttgagttcagctctgctgtgtttgtgttcagaGCTGTgcgttttgttattattttgtaaagaCAGGACAGGAAGTCACTCTGAACTCTGGAATATGTAAATACACGGACCAAAAACGACTACGGAGCAGTTATAGACgctttcatttgtttttgtacCATTTTCCTGTAAAAAATAACTCATGAATGCTGTTCATCTACTTCTACACTGCCGACCAGTATAAAAATAACGTGCAAAACGGATCTAGATCCTCATTATCTAGTGCATTTCATCCagtgacccccccccccttcaatCTCACCCTCACCCTGCTCATCTGTGAATTATCATCTGTGATCTATTATATCattgttttattagtttgtACACATGCAGACATGTAGTCAGAAATGTCAAATcaccaaaataaattaataaaactatgATTCTTATCTCAGCggatttaaaacttaaaacttgagCTAATAGAAACTCAAAAGCTGTGCTAAAATATGAATTACTGCATCAGCAGATACtgattttacctttttaatcccttaaaagagaaaaaagttgTGAAAAAAGTATCTACTATAACTGATATACTAGTTCATCTCTgaaagaatatcattgaaaagtttctttatttctttagtaattaatttgaaaatgtgaaactcatataatatatagatgtattaaacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176547 lncRNA upstream 6464 9279435 ~ 9279813 (+) True G130540
TU176540 lncRNA upstream 57185 9228499 ~ 9229092 (+) True G130538
TU176514 lncRNA upstream 92503 9193450 ~ 9193774 (+) False spryd3
TU176512 lncRNA upstream 93424 9192027 ~ 9192853 (+) False spryd3
TU176490 lncRNA upstream 119659 9161478 ~ 9166618 (+) True G130495
TU176570 lncRNA downstream 48808 9382943 ~ 9383194 (+) True G130559
TU176816 lncRNA downstream 137481 9471616 ~ 9474358 (+) True G130758
TU176820 lncRNA downstream 149186 9483321 ~ 9483528 (+) True G130762
TU176821 lncRNA downstream 154391 9488526 ~ 9489598 (+) True G130763
TU176869 lncRNA downstream 281759 9615894 ~ 9616100 (+) True G130806
XM_022677066.1 mRNA upstream 33206 9245472 ~ 9253071 (+) False znf740
XM_022677065.1 mRNA upstream 33206 9245477 ~ 9253071 (+) False znf740
XM_022677064.1 mRNA upstream 33206 9245478 ~ 9253071 (+) True znf740
XM_022677063.1 mRNA upstream 43496 9230530 ~ 9242781 (+) True csad
XM_022677062.1 mRNA upstream 61566 9220642 ~ 9224711 (+) False LOC103043576
XM_022677072.1 mRNA downstream 284223 9618358 ~ 9645766 (+) True LOC111194074
XM_022677073.1 mRNA downstream 292874 9627009 ~ 9645766 (+) False LOC111194074
XM_022677081.1 mRNA downstream 439975 9774110 ~ 9793416 (+) True LOC103044467
XM_007235739.3 mRNA downstream 462056 9796191 ~ 9798893 (+) True mfsd5
XM_022677077.1 mRNA downstream 488497 9822632 ~ 9846742 (+) True LOC103043867
TU176519 other upstream 166495 9117170 ~ 9119782 (+) True G130518
TU176443 other upstream 427607 8853694 ~ 8858670 (+) False LOC103024807
TU176364 other upstream 721702 8563650 ~ 8564575 (+) True G130413
TU176159 other upstream 1192224 8092984 ~ 8094053 (+) False LOC103037383
XR_002650868.1 other upstream 1677394 7601605 ~ 7608883 (+) False lzic
TU176928 other downstream 422817 9756952 ~ 9757351 (+) True G130844
TU176943 other downstream 522271 9856406 ~ 9871591 (+) False LOC111194075
XR_002650874.1 other downstream 533953 9868088 ~ 9871772 (+) True LOC111194075
TU176945 other downstream 588882 9923017 ~ 9928014 (+) False LOC103038829
TU177643 other downstream 2157428 11491563 ~ 11502723 (+) True G131313

Expression Profile