G130806


Basic Information

Item Value
gene id G130806
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9615894 ~ 9616100 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176869
ttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaatcaaagaaactcatcatttttaagtgctctcttattttttccagagctgtatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176869 True 207 lncRNA 0.37 1 9615894 9616100

Neighbor

gene id symbol gene type direction distance location
cbx5 cbx5,LOC103047453,LOC107664188,LOC107707003,LOC107714996 coding upstream 283476 9322681 ~ 9332418 (+)
znf740 znf740 coding upstream 362823 9245472 ~ 9253071 (+)
csad csad,LOC107697858,LOC107599458,LOC107706996 coding upstream 373113 9230530 ~ 9242781 (+)
LOC103043576 NA coding upstream 391183 9220634 ~ 9224711 (+)
zbtb39 zbtb39 coding upstream 508609 9099492 ~ 9107285 (+)
LOC111194074 calcoco1a,LOC108433409 coding downstream 2258 9618358 ~ 9645766 (+)
LOC103044467 LOC108433411,LOC108276259 coding downstream 158010 9774110 ~ 9793416 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding downstream 180091 9796191 ~ 9798893 (+)
LOC103043867 LOC108433414,LOC104967021,LOC106572606 coding downstream 206532 9822632 ~ 9846742 (+)
LOC103039028 LOC108433422 coding downstream 313735 9929835 ~ 9976607 (+)
G130763 hoxc6,hoxc6aa,LOC103034651,LOC108433405,LOC105013626 non-coding upstream 126296 9488526 ~ 9489598 (+)
G130762 NA non-coding upstream 132366 9483321 ~ 9483528 (+)
G130758 hoxc4,LOC103034018,LOC108433407 non-coding upstream 141536 9471616 ~ 9474358 (+)
G130559 NA non-coding upstream 232700 9382943 ~ 9383194 (+)
G130553 NA non-coding upstream 281759 9286277 ~ 9334135 (+)
G130807 NA non-coding downstream 30174 9646274 ~ 9648942 (+)
G130811 NA non-coding downstream 39287 9655387 ~ 9656360 (+)
G130814 NA non-coding downstream 49420 9665520 ~ 9668102 (+)
G130842 NA non-coding downstream 203534 9819634 ~ 9848200 (+)
G130849 NA non-coding downstream 213059 9829159 ~ 9829420 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 293814 9306154 ~ 9322080 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other upstream 422116 9132575 ~ 9193778 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other upstream 496112 9117170 ~ 9119782 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other upstream 745065 8853689 ~ 8870829 (+)
cda LOC108416503,LOC108433378 other upstream 950075 8662743 ~ 8665819 (+)
G130844 NA other downstream 140852 9756952 ~ 9757351 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other downstream 240306 9856406 ~ 9871772 (+)
mlh3 mlh3,LOC107591079 other downstream 295207 9911307 ~ 9920995 (+)
LOC103038829 NA other downstream 306881 9922981 ~ 9928233 (+)
LOC107197146 NA other downstream 1199760 10815860 ~ 10829558 (+)

Expression


Co-expression Network