G130849


Basic Information

Item Value
gene id G130849
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9829159 ~ 9829420 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176933
CTCTGTCCGTGCAGTAAATACTCACAGCCGGACTGTGCGCCCTGTAAAAGGTCACTACTCAGCTCTCAGACTCTCAGACTGTCTCTGTTCCGTGTCGAAATGTTAAGTAACCTTAGATTCCTAGTGGACCACGCCTTTACAACACATCTCACATGATATCACTGAAAACAGACACTTTTAACATTCCCAGAATTCTGTTTAAAAGCATAGATTGAGCATTCATGCACTCATTAGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176933 True 238 lncRNA 0.43 2 9829159 9829420

Neighbor

gene id symbol gene type direction distance location
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding upstream 30266 9796191 ~ 9798893 (+)
LOC103044467 LOC108433411,LOC108276259 coding upstream 35743 9774110 ~ 9793416 (+)
LOC111194074 calcoco1a,LOC108433409 coding upstream 183393 9618358 ~ 9645766 (+)
cbx5 cbx5,LOC103047453,LOC107664188,LOC107707003,LOC107714996 coding upstream 496741 9322681 ~ 9332418 (+)
znf740 znf740 coding upstream 576088 9245472 ~ 9253071 (+)
LOC103039028 LOC108433422 coding downstream 100415 9929835 ~ 9976607 (+)
c1qtnf12 fam132a,LOC107591142,LOC107687484,LOC107716139,LOC107593919 coding downstream 192345 10021765 ~ 10060015 (+)
LOC103041698 olfml3a,LOC108433368,LOC107716140,LOC107687444,LOC107593917,LOC108276296 coding downstream 278746 10108166 ~ 10115520 (+)
klhl21 klhl21,LOC107687446,LOC107593916,LOC107716146 coding downstream 417158 10246578 ~ 10263598 (+)
nol9 nol9 coding downstream 442350 10271770 ~ 10284418 (+)
G130814 NA non-coding upstream 161057 9665520 ~ 9668102 (+)
G130811 NA non-coding upstream 172799 9655387 ~ 9656360 (+)
G130807 NA non-coding upstream 180217 9646274 ~ 9648942 (+)
G130806 NA non-coding upstream 213059 9615894 ~ 9616100 (+)
G130763 hoxc6,hoxc6aa,LOC103034651,LOC108433405,LOC105013626 non-coding upstream 339561 9488526 ~ 9489598 (+)
G130864 kansl2,LOC107591080,LOC107737532,LOC107716132,LOC107687436,LOC107593923 non-coding downstream 48888 9878308 ~ 9879577 (+)
G130855 NA non-coding downstream 116790 9946210 ~ 9978596 (+)
G130854 NA non-coding downstream 149435 9978855 ~ 9981835 (+)
G130856 NA non-coding downstream 151578 9980998 ~ 10042081 (+)
G130884 NA non-coding downstream 177599 10007019 ~ 10012404 (+)
G130844 NA other upstream 71808 9756952 ~ 9757351 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 507079 9306154 ~ 9322080 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other upstream 635381 9132575 ~ 9193778 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other upstream 709377 9117170 ~ 9119782 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other upstream 958330 8853689 ~ 8870829 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other downstream 26986 9856406 ~ 9871772 (+)
mlh3 mlh3,LOC107591079 other downstream 81887 9911307 ~ 9920995 (+)
LOC103038829 NA other downstream 93561 9922981 ~ 9928233 (+)
LOC107197146 NA other downstream 986440 10815860 ~ 10829558 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 1662143 11491563 ~ 11502723 (+)

Expression


Co-expression Network