G130763 (hoxc6,hoxc6aa,LOC103034651,LOC108433405,LOC105013626)


Basic Information

Item Value
gene id G130763
gene name hoxc6,hoxc6aa,LOC103034651,LOC108433405,LOC105013626
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9488526 ~ 9489598 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176821
gcttttattcatttaacacAACATTATAAGCATGGCTACaggtgcttttatttttattttttattattaaattcacTGAACAGTACATATTTCGCCAGTACAGCGGCGTTTCGCACATCCATGCACTGACGGGATATAGGTCTAGACAAGatgaaataaacacacaaaagaaagtTTATAAGAGTTTAGGTAGTACGGTTCATCCCgccaatgctggtggctttgtaCAAATGAGcgagaacacaaaaaaaaactcaatatgTGCATAGactacattttctttttccttcacaTTTGGAATGCTATTGGCACTGCGTTTTGCATCAGTAAGAGAAAAAAGGCATAGCCCACTGATCAAATTAGTGTATAGATCGTTCTTAGTGTACCTGTATTCCAGCCCAAATAAACACGATAGTAATAGGACTGGTAATCACACAAATTTATGGCATCTActgatgtttattatttttttttcatgttttcatatCCACGCTACCAAAAATACAAAGAATAGTAAATTGTATAACGCTGCATttagtctctctctctctctctctctctctctctctctctccacgtGAATATTCGTGTGGTAGTGGTGGAGATAATAAGGGTGTAAAAGGTAGTATAGCAGAATATACAGTCCATGCAGTTATAATTGCATTTCTGAGAGTTTAGGTAGTTACGTTGCAGTTTAACAGGcgttcaaacaaacaaacgaacaaaaatacattttattagtcATTCTTTTTTACTTCTTCTGTCTTCTCCTGTATGCTCTGTTTCTCGGGTTCCTGAGTAGCACCCGATTCCGTGCCGGTTACAGTCGAGGTTAGGTTGGACTCCTTCTTCCATTTCATGCGCCGGTTCTGGAACCAAATCTTGATCTGACGCTCTGTTAAGCAAAGAGCATTGGCAATCTCAATTCGTCTGCGTCTGGTCAAATAGCGATTGAAGTGGAATTCCTTTTCCAGCTCCAGGGTTTGGTATCGGGAGTAAATCTGTCGACCTCTCCTTCTGTCTGACCCGTACCCAACTCCTGTTAATAGCA

Function

symbol description
hoxc6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic skeletal system development. Located in cytosol and nucleoplasm.

NR:

description
homeobox protein Hox-C6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176821 True 1051 lncRNA 0.39 2 9488526 9489598

Neighbor

gene id symbol gene type direction distance location
cbx5 cbx5,LOC103047453,LOC107664188,LOC107707003,LOC107714996 coding upstream 156108 9322681 ~ 9332418 (+)
znf740 znf740 coding upstream 235455 9245472 ~ 9253071 (+)
csad csad,LOC107697858,LOC107599458,LOC107706996 coding upstream 245745 9230530 ~ 9242781 (+)
LOC103043576 NA coding upstream 263815 9220634 ~ 9224711 (+)
zbtb39 zbtb39 coding upstream 381241 9099492 ~ 9107285 (+)
LOC111194074 calcoco1a,LOC108433409 coding downstream 128760 9618358 ~ 9645766 (+)
LOC103044467 LOC108433411,LOC108276259 coding downstream 284512 9774110 ~ 9793416 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding downstream 306593 9796191 ~ 9798893 (+)
LOC103043867 LOC108433414,LOC104967021,LOC106572606 coding downstream 333034 9822632 ~ 9846742 (+)
LOC103039028 LOC108433422 coding downstream 440237 9929835 ~ 9976607 (+)
G130762 NA non-coding upstream 4998 9483321 ~ 9483528 (+)
G130758 hoxc4,LOC103034018,LOC108433407 non-coding upstream 14168 9471616 ~ 9474358 (+)
G130559 NA non-coding upstream 105332 9382943 ~ 9383194 (+)
G130547 NA non-coding upstream 150165 9267967 ~ 9338361 (+)
G130806 NA non-coding downstream 126296 9615894 ~ 9616100 (+)
G130807 NA non-coding downstream 156676 9646274 ~ 9648942 (+)
G130811 NA non-coding downstream 165789 9655387 ~ 9656360 (+)
G130814 NA non-coding downstream 175922 9665520 ~ 9668102 (+)
G130842 NA non-coding downstream 330036 9819634 ~ 9848200 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 166446 9306154 ~ 9322080 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other upstream 294748 9132575 ~ 9193778 (+)
G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 other upstream 368744 9117170 ~ 9119782 (+)
LOC103024807 LOC108435578,LOC107565318,LOC107701248 other upstream 617697 8853689 ~ 8870829 (+)
cda LOC108416503,LOC108433378 other upstream 822707 8662743 ~ 8665819 (+)
G130844 NA other downstream 267354 9756952 ~ 9757351 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other downstream 366808 9856406 ~ 9871772 (+)
mlh3 mlh3,LOC107591079 other downstream 421709 9911307 ~ 9920995 (+)
LOC103038829 NA other downstream 433383 9922981 ~ 9928233 (+)
LOC107197146 NA other downstream 1326262 10815860 ~ 10829558 (+)

Expression


Co-expression Network