LOC103038829


Basic Information

Item Value
gene id LOC103038829
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9922981 ~ 9928233 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU176945
CTGTCTCGGTGGTTTAGCTGCTGAGTTTGTTGAAGGAGAGAGGCGACTGAGGAGCGAAATACCGATGCCAAAATGAACCGGATTCGGATCCACGTGGTGCCGTCCAGCCGAGGCAGGGTCACCCAGAGAAGCTGCTCTCGATCCAGTcttgatccgacccagctatcaaatatactacttttatttgaactaaactgctgataacgcacagtttaatctgatatattaaccacagctatgaacaaaggCTGTctttgctgctccatgctgtttacacacatggtctgtgctgtgttcactgcacatctgtgttaaagcagtttAGGTTTATACAtatgtgaaaccaaaccaaacaaagggagAAAATGCTACAAGTAAAGGAACATCAACTCATCCGGActatagaaaccaactacaggtgtgaaaacgccttaTGTGTTCAACAAGAACGGCAAGCGTTGTCCCAGTGCAGCACCGAAACCCCAGAAAAGAAGGACGGGCCCACTCAGTACGACAGAGCCAGAGATGCATTTCCTGTGTGGAAGGGACGCGATGCTCAAACCAGTGGCTGCCAATGACACGACATTGTGTTTCTCATATTTACCAAGACAGCAGCCAGGAGTTTTTCAAGATGGGCTGAAGGAGATCCCCTGTGACCAGTGCCGCCGAGCTGCAGCCCACCGAGAGCCTACCACTGGAGTTCAGAGATACTGTGTCGGAGATAGCCGAGGCAGCAGGAGAGGAGGACGCCACACACAGTTCTTCAGTGGACGTCGACACAATAACCACAGAAGCTACGTCATCATGAGCACCTTCAGGcctgattttctcagctgtcagTAGACTTCACAGAGCTCGCCATGCTGAAGTGTTTCAGAATCCAAACTGTGACCAAAAAACATATTCACAACTCCAAAATCTGTAGAGCAGAGACTGTACCTGGTGATCGAAAACTTGCTTGAGGGTGTCAATGatggccttctggacagcagtcaggtcggcAGTCTTACCCACGATCGCGGTTTTGAGTAATGAATTGATTTGAGTAATGAGTTTTTAAAAGCCTTaggaatcttttgcaggtgtttatTCGTTAATTCgttgattcagatgattaggttaatagctcgtttagagaaccttttcatgatatgctaattttgtgagatagGAATTTTGAGTTTTCATGAGCTGTAGGCCAAAATCATcc
>XR_002650880.1
ATTCTTAGAGCCGAATCTTTCAAAACCGACTCATTACTGTCTCGGTGGTTTAGCTGCTGAGTTTGTTGAAGGAGAGAGGCGACTGAGGAGCGAAATACCGATGCCAAAATGAACCGGATTCGGATCCACGTGGTGCCGTCCAGCCGAGGCAGGGTCACCCAGAGAAGCTGCTCTCGATCCAGTcttgatccgacccagctatcaaatatactacttttatttgaactaaactgctgataacgcacagtttaatctgatatattaaccacagctatgaacaaaggCTGTctttgctgctccatgctgtttacacacatggtctgtgctgtgttcactgcacatctgtgttaaagcagtttAGGTTTATACAtatgtgaaaccaaaccaaacaaagggagAAAATGCTACAAGTAAAGGAACATCAACTCATCCGGActatagaaaccaactacaggtgtgaaaacgccttaTGTGTTCAACAAGAACGGCAAGCGTTGTCCCAGTGCAGCACCGAAACCCCAGAAAAGAAGGACGGGCCCACTCAGTACGACAGAGCCAGAGATGCATTTCCTGTGTGGAAGGGACGCGATGCTCAAACCAGTGGCTGCCAATGACACGACATTGTGTTTCTCATATTTACCAAGACAGCAGCCAGGAGTTTTTCAAGATGGGCTGAAGGAGATCCCCTGTGACCAGTGCCGCCGAGCTGCAGCCCACCGAGAGCCTACCACTGGAGTTCAGAGATACTGTGTCGGAGATAGCCGAGGCAGCAGGAGAGGAGGACGCCACACACAGTTCTTCAGTGGACGTCGACACAATAACCACAGAAGCTACGTCATCATGAGCACCTTCAGGcctgattttctcagctgtcagTAGACTTCACAGAGCTCGCCATGCTGAAGTGTTTCAGAATCCAAACTGTGACCAAAAAACATATTCACAACTCCAAAATCTGTAGAGCAGAGACTGTACCTGGTGATCGAAAACTTGCTTGAGGGTGTCAATGatggccttctggacagcagtcaggtcggcAGTCTTACCCACGATCGCGGTTTTGAGTAATGAATTGATTTGAGTAATGAGTTTTTAAAAGCCTTaggaatcttttgcaggtgtttatTCGTTAATTCgttgattcagatgattaggttaatagctcgtttagagaaccttttcatgatatgctaattttgtgagatagGAATTTTGAGTTTTCATGAGCTGTAGGCCAAAATCATccgtattaaaacaataaaagatctgaaatatttcagttggtgtgcactgaagtttaatttttataatttcattatggaaaataattaattttatcacaatatgctatttttttgagaaggacctgtattaataaaacaaatgctaACTGCTAGAGGACACATGCTAATATGGTGATACTACAACAGTCTTTGGAAATAAAATGTGTTGCTGTTGTCCTGAA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU176945 False 1210 TUCP 0.46 5 9923017 9928014
XR_002650880.1 True 1465 lncRNA 0.43 5 9922981 9928233

Neighbor

gene id symbol gene type direction distance location
LOC103043867 LOC108433414,LOC104967021,LOC106572606 coding upstream 76239 9822632 ~ 9846742 (+)
mfsd5 mfsd5,LOC107594050,LOC107664134,LOC107599659,LOC107599644,LOC107697860 coding upstream 124088 9796191 ~ 9798893 (+)
LOC103044467 LOC108433411,LOC108276259 coding upstream 129565 9774110 ~ 9793416 (+)
LOC111194074 calcoco1a,LOC108433409 coding upstream 277215 9618358 ~ 9645766 (+)
cbx5 cbx5,LOC103047453,LOC107664188,LOC107707003,LOC107714996 coding upstream 590563 9322681 ~ 9332418 (+)
LOC103039028 LOC108433422 coding downstream 1602 9929835 ~ 9976607 (+)
c1qtnf12 fam132a,LOC107591142,LOC107687484,LOC107716139,LOC107593919 coding downstream 93532 10021765 ~ 10060015 (+)
LOC103041698 olfml3a,LOC108433368,LOC107716140,LOC107687444,LOC107593917,LOC108276296 coding downstream 179933 10108166 ~ 10115520 (+)
klhl21 klhl21,LOC107687446,LOC107593916,LOC107716146 coding downstream 318345 10246578 ~ 10263598 (+)
nol9 nol9 coding downstream 343537 10271770 ~ 10284418 (+)
G130864 kansl2,LOC107591080,LOC107737532,LOC107716132,LOC107687436,LOC107593923 non-coding upstream 43404 9878308 ~ 9879577 (+)
G130842 NA non-coding upstream 74781 9819634 ~ 9848200 (+)
G130849 NA non-coding upstream 93561 9829159 ~ 9829420 (+)
G130814 NA non-coding upstream 254879 9665520 ~ 9668102 (+)
G130811 NA non-coding upstream 266621 9655387 ~ 9656360 (+)
G130855 NA non-coding downstream 17977 9946210 ~ 9978596 (+)
G130854 NA non-coding downstream 50622 9978855 ~ 9981835 (+)
G130856 NA non-coding downstream 52765 9980998 ~ 10042081 (+)
G130884 NA non-coding downstream 78786 10007019 ~ 10012404 (+)
G130935 NA non-coding downstream 137642 10065875 ~ 10066115 (+)
mlh3 mlh3,LOC107591079 other upstream 1986 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 51209 9856406 ~ 9871772 (+)
G130844 NA other upstream 165630 9756952 ~ 9757351 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 600901 9306154 ~ 9322080 (+)
spryd3 spryd3,LOC107714925,LOC107664113 other upstream 729203 9132575 ~ 9193778 (+)
LOC107197146 NA other downstream 887627 10815860 ~ 10829558 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 1563330 11491563 ~ 11502723 (+)
LOC111194085 LOC108425553 other downstream 1994107 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 2312463 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 2760921 12689154 ~ 12763710 (+)

Expression


Co-expression Network