LOC107197146


Basic Information

Item Value
gene id LOC107197146
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 10815860 ~ 10829558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU177230
CACAGAGCCCAGCAGCGGTGCGGCTAACTCTGCTCTCACAGAGAAAACAAAGAGATTTTACAGCTTTAAGCTTCATTAAAGGCTTAACTGGACCCGGATACACAGAGTGTGGACACGGCCTGAGAAATGAGCATCCAGAGCACCTAGAGTTTCCAGAGCATCCAGAGCATCTATAGCATACAGGGTATCCAGAGCACGCAGAATATCCAGAGCATCTACAGCATCCAGAGTATCCAGAGCACCCAAAGCATCCAGAGTATCCAGAGCACCCAAAGCATCCAGAGTATCCAGAGCACCCAAAGCATCCAGAGTATCCAGAGCATCCAGAGTGTCCAGAGCACCCAGAATATCCAGAGCATCTACAGCATCCAGAGCACCCAAAGTATCCAGAGCACCCAAAGTATCCAGAGCACCCAGAATATCCAGAGCATCCAGAGCATCTAGAGCATCCAGAGCACCCACATCAAGGGGAAGATGCTGTGCAACACCTTCCTGTTACTCTTGTTTCTCCTAAAAGCTGTGAACATTAGAGGTGAGCTCTGTTACTCATTCTAAACAGCTCTATCTGGCTGGTATTTAGTTTGTGTTACGTGATACAGAATCACAATATTGTAATATCATCATTATTGTGGGCAATGTATCGTGATAATACTGTATCGTGAGATGCCTTGTGATTCCCACCACTTATAtaatagataatatatatatcacacttatcagtcataacattaaaaccatctcCTTCTTCCCGGATTAATGATCCTACTTAAATTGTGtgtcttttcactttttctcatCAACCAATAACAGCTCTTGCGCGATACACTACCATCTAAAAGCGGAAGTTGATCTAATGCTACATGAGTCTATTTTTAAAGCCACGGCAAAGTTTCATTTCTGATATTCTTCTTTTGGTCACtgataactt
>XM_022677146.1
CGTTTCCGGTAGTGTACACAGAGCCCAGCAGCGGTGCGGCTAACTCTGCTCTCACAGAGAAAACAAAGAGATTTTACAGCTTTAAGCTTCATTAAAGGCTTAACTGGACCCGGATACACAGAGTGTGGACACGGCCTGAGAAATGAGCATCCAGAGCACCTAGAGTTTCCAGAGCATCCAGAGCATCTATAGCATACAGGGTATCCAGAGCACGCAGAATATCCAGAGCATCTACAGCATCCAGAGTATCCAGAGCACCCAAAGTATCCAGAACACCCAAAGCATCCAGAGTATCCAGAGCACCCAAAGTATCCAGAACACCCAAAGCATCCAGAGTATCCAGAGCACCCAAAGCATCCAGAGCATCTACAGCATCCAGAGTATCTAGAGCACCCAAAGTATCCAGAGCACCCAGAATATCCAGAGCATCTAGAGCATCCAGAGCACCCACATCAAGGGGAAGATGCTGTGCAACACCTTCCTGTTACTCTTGTTTCTCCTAAAAGCTGTGAACATTAGAGgtgGCACAACTGCTGTCCCCGAACTCCTGTCGACCCAGAATCCACCAGAATCTACGACCACTTCAGCTCAATGCCAAAGACCCACTTTACCAGATAAAGTGATTCTGAAGGCTGACTCATACAAAGAGATATATGAAAAGGACTCCACTGCAAAGCTGGAATGTGAACCTGGCTATACACCAGCTACTTTTGTCAGCAGAACCATCAAATGCCTTGGAGGCATTTGGACAGAAACTAAATTTCGATGCAAAAaaaAGTCCTGTGGAGCTCTTAAAGATATCCCTAATGGGAGATATTTGATTACAGAAGGAATCGAGTTTGGAGCGGTAGTGAAGGCTGAATGTAACCTCGGCTATGAACTTTATGGATCTGACACTAGGGTTTGCAAACTTAATGGATGGACTGGAAGAGACATTGAGTGTGAAGtgGTGAAATGTACAGAAGTTCCCACCATAGCGAATGGAAAACCTGAAGAAGAACCGTACAGCCAGTATGAATTTGGACAGTCAATTTCATACAGGTGTAATAAAGATTTTGATATGTTTGGAGACTCAACAATAACATGTTCAAAAGATGGAAAGTTTCAGCCGGCTCCTCCTGAGTGTTTAAaaatttCCTGTGCGAGGCCAGAGATTCCAGATGCAACAAGAACGGAAGGACGGTCCCCTTATAGATATAAATCTACTGTCCGATACGAGTGTAACCGTGGCTACAAAATGAATGGGGAAGGTTATCTAGTCTGTCAGAAAGATGGTTGGGTCCCACCCCCTCCAAACTGCACAATGGTGACATGTCCAAAGCCCTCTGTCTTCGATAATGGATATTTCAGTCCAGATAAGGAGCTGTATAAATATGAGGAAAAATTGACGTTTTCTTGTAAGAAAGGGTTTAGACTTGAAGGAGCTTCAGAAATCGTCTGTACCATGGATGAAATTTTtaaacctcctcctcctcgctgTGTGGtggtgACATGTCCAACACCTCAGTCTATAAGTAATGGACGAATTAATGATCCAATcctgaatatatataattacgGACAAACAGTGACGTACTCCTGTATGGAAGGCTTTAGACTTCGAGGGGAATCGAGACTATCCTGCATAGAGACCGGAAAGTTTCATCCAAATCCTCCTACGTGTGTGAGGACGTGTCCAGGACCTCCTGTTATAGCTAATGGAGAATTTGATCCAGTCCTGGTGCGGTATGATTCTGGACAGGCAGTGACGTACTCCTGTATAAAAGGGTTCAGACTTCAAGGAGCTTCAAAAGTATCCTGCTCTGAGGAAGGAACTTTTAAACCAAATCCTCCTGAGTGTGTGGAGACGTGTCCAACTCCTCCTACAATAAGTAATGGAGAATTTGATCCACACCTGAAGCAGTATGATCAGGGACAGAAAGTGACGTACTCTTGTCCAGTAGGCTACAGGCTTAATGGATTTTCAACAATAATCTGTTCTAAGGGTGGAAAatatcatcctcctcctcctactcAGTGTGAGCTCCATTGGGGCGCTATTGCCATCTTTACAACCACCCCACTCGCACTGTTGGCCTTAGGTGGGGCTCTGTTTTTGAGGAACAAGAAAAAATCTCAGAGCTATTCCATGTCCACGTTCGACATGAAGCCACtttcaaataaatgattttgagCTGATGCTGAATGTAAACTCTGCCAGCCCCTGCACTTCCCACAGCTTCAGCATTAAGACCAGTTTAGATCATTCTCAGAGAGTTCTCTTCTAAAAGGTATTTCATGTTCATGCACTGAAGAAAGttctgtaccagtcaaaagtttggacgcacCTCTTATTTAATGCGttaatttctttttatgatgagctggagctttttTCACATCGTGAttgaaaagcagcagctattgttcagcacctccag
>XM_022677147.1
CGTTTCCGGTAGTGTACACAGAGCCCAGCAGCGGTGCGGCTAACTCTGCTCTCACAGAGAAAACAAAGAGATTTTACAGCTTTAAGCTTCATTAAAGGCTTAACTGGACCCGGATACACAGTTAGATGGATTGTGTACTAAACCCGTGTTTGGTGTTGAGAGTGTGGACACGGCCTGAGAAATGAGCATCCAGAGCACCTAGAGTTTCCAGAGCATCCAGAGCATCTATAGCATACAGGGTATCCAGAGCACGCAGAATATCCAGAGCATCTACAGCATCCAGAGTATCCAGAGCACCCAAAGTATCCAGAACACCCAAAGCATCCAGAGTATCCAGAGCACCCAAAGTATCCAGAACACCCAAAGCATCCAGAGTATCCAGAGCACCCAAAGCATCCAGAGCATCTACAGCATCCAGAGTATCTAGAGCACCCAAAGTATCCAGAGCACCCAGAATATCCAGAGCATCTAGAGCATCCAGAGCACCCACATCAAGGGGAAGATGCTGTGCAACACCTTCCTGTTACTCTTGTTTCTCCTAAAAGCTGTGAACATTAGAGgtgGCACAACTGCTGTCCCCGAACTCCTGTCGACCCAGAATCCACCAGAATCTACGACCACTTCAGCTCAATGCCAAAGACCCACTTTACCAGATAAAGTGATTCTGAAGGCTGACTCATACAAAGAGATATATGAAAAGGACTCCACTGCAAAGCTGGAATGTGAACCTGGCTATACACCAGCTACTTTTGTCAGCAGAACCATCAAATGCCTTGGAGGCATTTGGACAGAAACTAAATTTCGATGCAAAAaaaAGTCCTGTGGAGCTCTTAAAGATATCCCTAATGGGAGATATTTGATTACAGAAGGAATCGAGTTTGGAGCGGTAGTGAAGGCTGAATGTAACCTCGGCTATGAACTTTATGGATCTGACACTAGGGTTTGCAAACTTAATGGATGGACTGGAAGAGACATTGAGTGTGAAGtgGTGAAATGTACAGAAGTTCCCACCATAGCGAATGGAAAACCTGAAGAAGAACCGTACAGCCAGTATGAATTTGGACAGTCAATTTCATACAGGTGTAATAAAGATTTTGATATGTTTGGAGACTCAACAATAACATGTTCAAAAGATGGAAAGTTTCAGCCGGCTCCTCCTGAGTGTTTAAaaatttCCTGTGCGAGGCCAGAGATTCCAGATGCAACAAGAACGGAAGGACGGTCCCCTTATAGATATAAATCTACTGTCCGATACGAGTGTAACCGTGGCTACAAAATGAATGGGGAAGGTTATCTAGTCTGTCAGAAAGATGGTTGGGTCCCACCCCCTCCAAACTGCACAATGGTGACATGTCCAAAGCCCTCTGTCTTCGATAATGGATATTTCAGTCCAGATAAGGAGCTGTATAAATATGAGGAAAAATTGACGTTTTCTTGTAAGAAAGGGTTTAGACTTGAAGGAGCTTCAGAAATCGTCTGTACCATGGATGAAATTTTtaaacctcctcctcctcgctgTGTGGtggtgACATGTCCAACACCTCAGTCTATAAGTAATGGACGAATTAATGATCCAATcctgaatatatataattacgGACAAACAGTGACGTACTCCTGTATGGAAGGCTTTAGACTTCGAGGGGAATCGAGACTATCCTGCATAGAGACCGGAAAGTTTCATCCAAATCCTCCTACGTGTGTGAGGACGTGTCCAGGACCTCCTGTTATAGCTAATGGAGAATTTGATCCAGTCCTGGTGCGGTATGATTCTGGACAGGCAGTGACGTACTCCTGTATAAAAGGGTTCAGACTTCAAGGAGCTTCAAAAGTATCCTGCTCTGAGGAAGGAACTTTTAAACCAAATCCTCCTGAGTGTGTGGAGACGTGTCCAACTCCTCCTACAATAAGTAATGGAGAATTTGATCCACACCTGAAGCAGTATGATCAGGGACAGAAAGTGACGTACTCTTGTCCAGTAGGCTACAGGCTTAATGGATTTTCAACAATAATCTGTTCTAAGGGTGGAAAatatcatcctcctcctcctactcAGTGTGAGCTCCATTGGGGCGCTATTGCCATCTTTACAACCACCCCACTCGCACTGTTGGCCTTAGGTGGGGCTCTGTTTTTGAGGAACAAGAAAAAATCTCAGAGCTATTCCATGTCCACGTTCGACATGAAGCCACtttcaaataaatgattttgagCTGATGCTGAATGTAAACTCTGCCAGCCCCTGCACTTCCCACAGCTTCAGCATTAAGACCAGTTTAGATCATTCTCAGAGAGTTCTCTTCTAAAAGGTATTTCATGTTCATGCACTGAAGAAAGttctgtaccagtcaaaagtttggacgcacCTCTTATTTAATGCGttaatttctttttatgatgagctggagctttttTCACATCGTGAttgaaaagcagcagctattgttcagcacctccag
>XM_022677148.1
CATCCAGAGCACCCAAAGTATCCAGAGCACCCAAAGTATCCAGAGCACCCAAAGCATCCAGAGTATCCAGAGCATCCAGAGTGTCCAGAGCACCCAGAATATCCAGAGCATCTACAGCATCCAGAGCACCCAAAGTATCCAGAGCACCCAAAGTATCCAGAGCACCCAGAATATCCAGAGCATCCAGAGCATCTAGAGCATCCAGAGCACCCACATCAAGGGGAAGATGCTGTGCAACACCTTCCTGTTACTCTTGTTTCTCCTAAAAGCTGTGAACATTAGAGgtgGCACAACTGCTGTCCCCGAACTCCTGTCGACCCAGAATCCACCAGAATCTACGACCACTTCAGCTCAATGCCAAAGACCCACTTTACCAGATAAAGTGATTCTGAAGGCTGACTCATACAAAGAGATATATGAAAAGGACTCCACTGCAAAGCTGGAATGTGAACCTGGCTATACACCAGCTACTTTTGTCAGCAGAACCATCAAATGCCTTGGAGGCATTTGGACAGAAACTAAATTTCGATGCAAAAaaaAGTCCTGTGGAGCTCTTAAAGATATCCCTAATGGGAGATATTTGATTACAGAAGGAATCGAGTTTGGAGCGGTAGTGAAGGCTGAATGTAACCTCGGCTATGAACTTTATGGATCTGACACTAGGGTTTGCAAACTTAATGGATGGACTGGAAGAGACATTGAGTGTGAAGtgGTGAAATGTACAGAAGTTCCCACCATAGCGAATGGAAAACCTGAAGAAGAACCGTACAGCCAGTATGAATTTGGACAGTCAATTTCATACAGGTGTAATAAAGATTTTGATATGTTTGGAGACTCAACAATAACATGTTCAAAAGATGGAAAGTTTCAGCCGGCTCCTCCTGAGTGTTTAAaaatttCCTGTGCGAGGCCAGAGATTCCAGATGCAACAAGAACGGAAGGACGGTCCCCTTATAGATATAAATCTACTGTCCGATACGAGTGTAACCGTGGCTACAAAATGAATGGGGAAGGTTATCTAGTCTGTCAGAAAGATGGTTGGGTCCCACCCCCTCCAAACTGCACAATGGTGACATGTCCAAAGCCCTCTGTCTTCGATAATGGATATTTCAGTCCAGATAAGGAGCTGTATAAATATGAGGAAAAATTGACGTTTTCTTGTAAGAAAGGGTTTAGACTTGAAGGAGCTTCAGAAATCGTCTGTACCATGGATGAAATTTTtaaacctcctcctcctcgctgTGTGGtggtgACATGTCCAACACCTCAGTCTATAAGTAATGGACGAATTAATGATCCAATcctgaatatatataattacgGACAAACAGTGACGTACTCCTGTATGGAAGGCTTTAGACTTCGAGGGGAATCGAGACTATCCTGCATAGAGACCGGAAAGTTTCATCCAAATCCTCCTACGTGTGTGAGGACGTGTCCAGGACCTCCTGTTATAGCTAATGGAGAATTTGATCCAGTCCTGGTGCGGTATGATTCTGGACAGGCAGTGACGTACTCCTGTATAAAAGGGTTCAGACTTCAAGGAGCTTCAAAAGTATCCTGCTCTGAGGAAGGAACTTTTAAACCAAATCCTCCTGAGTGTGTGGAGACGTGTCCAACTCCTCCTACAATAAGTAATGGAGAATTTGATCCACACCTGAAGCAGTATGATCAGGGACAGAAAGTGACGTACTCTTGTCCAGTAGGCTACAGGCTTAATGGATTTTCAACAATAATCTGTTCTAAGGGTGGAAAatatcatcctcctcctcctactcAGTGTGAGCTCCATTGGGGCGCTATTGCCATCTTTACAACCACCCCACTCGCACTGTTGGCCTTAGGTGGGGCTCTGTTTTTGAGGAACAAGAAAAAATCTCAGAGCTATTCCATGTCCACGTTCGACATGAAGCCACtttcaaataaatgattttgagCTGATGCTGAATGTAAACTCTGCCAGCCCCTGCACTTCCCACAGCTTCAGCATTAAGACCAGTTTAGATCATTCTCAGAGAGTTCTCTTCTAAAAGGTATTTCATGTTCATGCACTGAAGAAAGttctgtaccagtcaaaagtttggacgcacCTCTTATTTAATGCGttaatttctttttatgatgagctggagctttttTCACATCGTGAttgaaaagcagcagctattgttcagcacctccag

Function

GO: NA

KEGG:

id description
K04002 C4BPA; complement component 4 binding protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU177230 False 928 lncRNA 0.43 4 10815876 10817350
XM_022677146.1 False 2420 mRNA 0.44 16 10815860 10829558
XM_022677147.1 True 2459 mRNA 0.44 16 10815860 10829558
XM_022677148.1 False 2183 mRNA 0.44 14 10816671 10829558

Neighbor

gene id symbol gene type direction distance location
LOC103021375 LOC108441398,LOC107570136,LOC107668555,LOC107716162,LOC107564641,LOC107695834,LOC107737499 coding upstream 54794 10749637 ~ 10761066 (+)
magi3 magi3 coding upstream 73156 10535483 ~ 10742704 (+)
tmem269 pss,LOC108275772,LOC100689985,LOC107570193,LOC108441403,LOC107668567,LOC107695831,LOC107568457,LOC101473555,LOC102292634 coding upstream 295048 10507956 ~ 10520812 (+)
hspg2 hspg2 coding upstream 312633 10347459 ~ 10503227 (+)
LOC103036206 LOC108441407,LOC108276043,LOC108232157,LOC103467627,LOC102232098,LOC102300702,LOC101484387 coding upstream 487482 10315033 ~ 10328378 (+)
LOC103041826 NA coding downstream 9485 10839043 ~ 10858797 (+)
LOC103044697 gdi1,LOC108276388,LOC108425579,LOC107564645 coding downstream 44940 10874498 ~ 10887086 (+)
ada ada coding downstream 139731 10969289 ~ 10989500 (+)
fitm2 NA coding downstream 280812 11110370 ~ 11113964 (+)
LOC103046525 LOC108425571 coding downstream 285971 11115529 ~ 11127920 (+)
G131016 NA non-coding upstream 49672 10764217 ~ 10766188 (+)
G131030 NA non-coding upstream 147846 10666409 ~ 10668014 (+)
G131023 NA non-coding upstream 207502 10608086 ~ 10608358 (+)
G131009 NA non-coding upstream 235665 10516493 ~ 10580195 (+)
G131000 NA non-coding upstream 310326 10493086 ~ 10505534 (+)
G131046 NA non-coding downstream 4013 10833571 ~ 10834026 (+)
G131072 NA non-coding downstream 100863 10930421 ~ 10930689 (+)
G131073 NA non-coding downstream 101163 10930721 ~ 10932926 (+)
G131085 NA non-coding downstream 162345 10991903 ~ 10994146 (+)
G131088 NA non-coding downstream 166116 10995674 ~ 11027976 (+)
LOC103038829 NA other upstream 887627 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 894865 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 944088 9856406 ~ 9871772 (+)
G130844 NA other upstream 1058509 9756952 ~ 9757351 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 1493780 9306154 ~ 9322080 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 662005 11491563 ~ 11502723 (+)
LOC111194085 LOC108425553 other downstream 1092782 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 1411138 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 1859596 12689154 ~ 12763710 (+)
G131677 NA other downstream 2083933 12913491 ~ 12940847 (+)

Expression


Co-expression Network