LOC103044697 (gdi1,LOC108276388,LOC108425579,LOC107564645)


Basic Information

Item Value
gene id LOC103044697
gene name gdi1,LOC108276388,LOC108425579,LOC107564645
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 10874498 ~ 10887086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677156.1
CGTTCGAGCTACCCGAGTCGGTGGTATGGCCAGGGCCATCTTTGGACGTCCTCTTCGCCGGTCGCAGTAAAAATCCCGTAATAAATCCGAACCTGAGCTTCATTTGCAGCATCAGAGCGCCGGATCCAGTGGTGTAGGCTTGTCTCGCATAGAGCTCGCTCGAATTAAGGCGTGGCATCCTGTAGTTTTCGTTTGGCACGGTTTGTATTACTCTGTAGCTGCATCAATTCAACATGGATGAGGAGTATGATGTGATCGTGCTGGGAACCGGACTCACAGAATGTATTCTCTCTGGGATCATGTCGGTGAATGGGAAGAAAGTTCTGCACATGGACAGGAACCCGTATTACGGAGGAGAAAGTTCTTCCATCACCCCTCTGGAGGAGctgtaTAAGCGGTTCGAGCTTTCGGACGGACCTGCAGAGTCGATGGGACGGGGCAGAGACTGGAACGTGGACCTCATCCCTAAATTTCTCATGGCCAATGGGCAGTTAGTTAAGATGCTGTTATATACAGAGGTGACCAGATATCTGGATTTTAAAGTGGTGGAGGGAAGCTTTGTGTATAAAGGTGGAAAGATCTATAAAGTGCCCTCGACGGAGACAGAGGCCCTGGCTTCaaatttaatgGGGATGTTTGAGAAGAGACGTTTCCGGAAATTCTTAGTTTTTGTGGCCAACTTTGACGAGAATGACCCGAAGACGTTTGAGGGTGTTGATCCCAAACAGACGACGATGGGGGAAGTGTACAAGAAGTTTGATCTGGGGCAGGATGTTATAGATTTTACTGGACACGCCCTGGCCCTCTACAGGACGGATGATTACCTCGAGCAGCCGTGCCTGGAGACCATCAACCGGATCAAGCTGTACAGCGAGTCACTGGCTCGTTATGGGAAAAGCCCGTACCTGTACCCGTTATACGGCCTGGGGGAACTGCCTCAGGGCTTCGCCAGGCTAAGTGCAATTTATGGAGGAACCTACATGCTGAACAAACCAGTGGATGAGATAGTGATGGAGGGCGGCCATGTTATTGGAGTGAAATCGGAAGGAGAGatTGCTCGGTGCAAGCAGCTCATCTGCGACCCCAGCTACATTCCTGACCGCGTGCGCAAAGCAGGCCAGGTGATCCGGGTCATCTGCATCCTCAGCCACCCCATAAAAAACACCAACGATGCCAACTCCTGCCAGATCATCATTCCCCAGAACCAGGTTAACCGCAAGTCAGATATCTACGTGTGTATGATATCCTATGCCCATAACGTGGCGGCGCAGGGAAAGTACATCGCCATCGTGAGCACCACTGTGGAAACTGCAGAGCCTGAAGCTGAGATTGAGCCTGCTCTGGAGCTCCTCGAGCCCATTGACCAAAaGTTCATGGCGATCAGTGACATGTATGAGCCAACAGATGATGGTTCAGACAGTCAGGTTTTCGCCTCACGATCCTACGACGCCACCACTCACTTCGAGACGACCTGCAACGACATCAAGGACATCTACAAGCGCATGACGGGCAGCGACTTTGACTTCGAGAACATGAAACGCAAACAGAACGACGTGTTCGGGGAGGACGAGCAGTGAGGGAGGggaggagatggagatggagggatggaggagaaGGGAGATGAGGACAGTCTACAGGGGAAACACACGGTGGTGGTCGCTTGTGAGGAGGGTGTTGCTTGTTGCTTAAATTTAGACCATTTAGATCATTTggatttagataaaaaaatgagAGTTAAAACAGCCACACCAGATCACAGGCGGCTATCAGCTGCCCTTAGCTTTCCTTTTTCTAGTCTCGATCCTCGtttcctctcctctttctctctctctttctctccctttctctttctttttcaagTATGTACACTTTAGCACAGAGGCACAATGCTCTTATGCTCACATTCCCCCCGACGCATCCTTCACAGAGCAAGGTCGCTACCTTCATCTTAGACTTTTTTCGTGAACATGATAAGCATCATTCCAGCTACGTTTGAAGTGAAAAGTGAAACATTTCCACGCCTTATTTGTTTGTGAGTCGTTTTTAGTTTATGAATGATGTCTCTCTGGCAGCAGCCCTCATGTCTTTGCATAATAACCCACTAATTAACGTTAACGAGTGTGTGAGTAGATCGGAACTGTGAAAtcactattattttaattcattccAAACAAttatgtgactttttttttactatgtgaCGAAAATAGTACTGTTAACATTTTAAGACACTAACAGAAACAGCATGAAGTTTTGAGTAGgtgatataaattaaaaatgacaa

Function

symbol description
gdi1 Predicted to enable Rab GDP-dissociation inhibitor activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability; non-syndromic X-linked intellectual disability 41; and psychotic disorder. Orthologous to human GDI1 (GDP dissociation inhibitor 1).

NR:

description
PREDICTED: rab GDP dissociation inhibitor alpha

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677156.1 True 2284 mRNA 0.48 11 10874498 10887086

Neighbor

gene id symbol gene type direction distance location
LOC103041826 NA coding upstream 15701 10839043 ~ 10858797 (+)
LOC103021375 LOC108441398,LOC107570136,LOC107668555,LOC107716162,LOC107564641,LOC107695834,LOC107737499 coding upstream 113432 10749637 ~ 10761066 (+)
magi3 magi3 coding upstream 131794 10535483 ~ 10742704 (+)
tmem269 pss,LOC108275772,LOC100689985,LOC107570193,LOC108441403,LOC107668567,LOC107695831,LOC107568457,LOC101473555,LOC102292634 coding upstream 353686 10507956 ~ 10520812 (+)
hspg2 hspg2 coding upstream 371271 10347459 ~ 10503227 (+)
ada ada coding downstream 82203 10969289 ~ 10989500 (+)
fitm2 NA coding downstream 223284 11110370 ~ 11113964 (+)
LOC103046525 LOC108425571 coding downstream 228443 11115529 ~ 11127920 (+)
LOC103032800 lrp1,LOC108425568,LOC107593902,LOC107673053 coding downstream 298662 11185748 ~ 11363351 (+)
LOC103033368 LOC108425561,LOC108276129,LOC107593912,LOC107673097,LOC107737522,LOC107591068,LOC107716150 coding downstream 764423 11651509 ~ 11665934 (+)
G131046 NA non-coding upstream 40472 10833571 ~ 10834026 (+)
G131016 NA non-coding upstream 108310 10764217 ~ 10766188 (+)
G131030 NA non-coding upstream 206484 10666409 ~ 10668014 (+)
G131023 NA non-coding upstream 266140 10608086 ~ 10608358 (+)
G131009 NA non-coding upstream 294303 10516493 ~ 10580195 (+)
G131072 NA non-coding downstream 43335 10930421 ~ 10930689 (+)
G131073 NA non-coding downstream 43635 10930721 ~ 10932926 (+)
G131085 NA non-coding downstream 104817 10991903 ~ 10994146 (+)
G131088 NA non-coding downstream 108588 10995674 ~ 11027976 (+)
G131094 NA non-coding downstream 153837 11040923 ~ 11046860 (+)
LOC107197146 NA other upstream 44940 10815860 ~ 10829558 (+)
LOC103038829 NA other upstream 946265 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 953503 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 1002726 9856406 ~ 9871772 (+)
G130844 NA other upstream 1117147 9756952 ~ 9757351 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 604477 11491563 ~ 11502723 (+)
LOC111194085 LOC108425553 other downstream 1035254 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 1353610 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 1802068 12689154 ~ 12763710 (+)
G131677 NA other downstream 2026405 12913491 ~ 12940847 (+)

Expression


Co-expression Network