G131009


Basic Information

Item Value
gene id G131009
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 10516493 ~ 10580195 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU177177
ggattaactgtggatgctgtaagaggaagctgtctgaaagggatgttcgggtgataacccggattgtatccaaaaaaacataaatccacggctgatcaaatcacgcagaattcgcttataaatgtgcacctcaactctccgtcaacacaatcaattactgtgctctaaaaccaggtgcttcagtttcaCTGTCTAACCCCTGTAGCTGAGCGTTTTAGCCCTGGCTGCCTTCATTATGGAGCAGGTCTTGCTGGGGAGAGGGATGTGCTGGTGCTGGATAAGAGAGGCTGTGAAGAGGCCAGGTCAGCTCTGGAGAGATTGGGCTCAGCCTCATCAGTCACCCAGGGCTCGGGGCCAGACAGCCGCCAACAGCGGCCTTTGCTTCATCAGGAACTCTGGCGCTCGGACAAGaaccctccaccaccaccagcaccaccacgCCAGCGTGGTAATTAATATGAGCCGGTAATGAGGATGCCTCCAAAGCTGATAAGCTGCTGAGGGGCTGATGATGGGAGATTGGGAGATGGCCTGCTGTCTCTCTGAGATTCTGGTTGGGATCAGAGGCTCCACAGGTTCTGTCACAGGTACCACAGGTACCACAGGTGCATGGTTACCAGAGCAACCATGTCTTATGGAGGTGTCTCGAGCCTTGTTGTGTTTGGCCGTTGTTAAAGCTGTAATTTGGCAAAGTAACAaaggtactgtattttttttattatataaaaaaaatcactgaaaagttcaaaatgtgaaactgatatattatataaatttattacacatagagtgatctatttgaagcgcttatttctttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177177 True 818 lncRNA 0.47 2 10516493 10580195

Neighbor

gene id symbol gene type direction distance location
hspg2 hspg2 coding upstream 13266 10347459 ~ 10503227 (+)
LOC103036206 LOC108441407,LOC108276043,LOC108232157,LOC103467627,LOC102232098,LOC102300702,LOC101484387 coding upstream 188115 10315033 ~ 10328378 (+)
LOC103040473 LOC108441408,LOC107695825,LOC107568460,LOC107570209,LOC107668563 coding upstream 203606 10290973 ~ 10312887 (+)
nol9 nol9 coding upstream 232075 10271770 ~ 10284418 (+)
klhl21 klhl21,LOC107687446,LOC107593916,LOC107716146 coding upstream 252895 10246578 ~ 10263598 (+)
LOC103021375 LOC108441398,LOC107570136,LOC107668555,LOC107716162,LOC107564641,LOC107695834,LOC107737499 coding downstream 169442 10749637 ~ 10761066 (+)
LOC103041826 NA coding downstream 258848 10839043 ~ 10858797 (+)
LOC103044697 gdi1,LOC108276388,LOC108425579,LOC107564645 coding downstream 294303 10874498 ~ 10887086 (+)
ada ada coding downstream 389094 10969289 ~ 10989500 (+)
fitm2 NA coding downstream 530175 11110370 ~ 11113964 (+)
G131000 NA non-coding upstream 10959 10493086 ~ 10505534 (+)
G130993 NA non-coding upstream 118418 10328674 ~ 10398075 (+)
G131001 NA non-coding upstream 139891 10374607 ~ 10376602 (+)
G130989 NA non-coding upstream 187210 10293042 ~ 10329283 (+)
G130980 NA non-coding upstream 283515 10232305 ~ 10232978 (+)
G131023 NA non-coding downstream 27891 10608086 ~ 10608358 (+)
G131030 NA non-coding downstream 86214 10666409 ~ 10668014 (+)
G131016 NA non-coding downstream 184022 10764217 ~ 10766188 (+)
G131046 NA non-coding downstream 253376 10833571 ~ 10834026 (+)
G131072 NA non-coding downstream 350226 10930421 ~ 10930689 (+)
LOC103038829 NA other upstream 588260 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 595498 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 644721 9856406 ~ 9871772 (+)
G130844 NA other upstream 759142 9756952 ~ 9757351 (+)
nfe2 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC100710772 other upstream 1194413 9306154 ~ 9322080 (+)
LOC107197146 NA other downstream 235665 10815860 ~ 10829558 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 911368 11491563 ~ 11502723 (+)
LOC111194085 LOC108425553 other downstream 1342145 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 1660501 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 2108959 12689154 ~ 12763710 (+)

Expression


Co-expression Network