RNA id: XM_022677062.1


Basic Information

Item Value
RNA id XM_022677062.1
length 2400
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC103043576
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9220634 ~ 9224711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGAGCAGCGCTCTCACACTACACCCATCAGAGCgggagaaaaataaacaaaaataaaagcgcCGTTTATTAAAACCGAATTATTCTATATTTAAACCGGTTCCTGAACCCgtttacactttatttattctctTAAAATAGCGGAATGAAGATCAGCGTACTGAGACAGCCGTGTGTTGTGTTAAATCGCGCTGTGGAGAGGACTTAAAAAGTGCTGCTCATTCATTCCAAGCATAAGAAACCATGGATGGAGATCCAGCAGGTGGCACCAGACTCATCCAGAAGTTCAAGCTTAAACTCATAGATGCTCTCtctggagatgcagattttgtGCTCCAGCATTGCCACTCTCTCAGTTTACTGTCTGATCGAGAGTATGACCAGGTAAAGCCCGCCAACGTCCCGTCTGAGAAAGTCCGGGACATCTTGGATTACGTGATGAGAAAAGACAGCAGGCGTGTTCAGATCTTCCTAAATCTCCTAAAGAACGACGAGATGCAGGAGACGTTTTCTAAACTCAGCTTCCTTAAAGATCTTCCTCTCAGCAAACCACCGACTGCAGAGAAAAGGAAGATGAAACGAGAAGAGACGATGTTGGAAGAAGAAGTGCCACCAAAGCAAACATGCAAAACCAgcagcagcagcagcagcaggatggTGACGGAGAAGCAGCTGATGTTGGTGTCTCGCCACATCGGGAGGAACTGGAAGGAGCTGGCCAGGGTGGATCTGGAGCTCTCCAGCACCAGACTGGAGCAGATAGAGGAGGAGAACCTCCACAGCCACAGAGAGCGAGTGTTCTCCGCGCTGAGAGCCTGGAGCATGCGGGAGAGGGACCGGGCCACGCCCACCCGGCTCCACTCGCTCCTCACTCAGGAGGAGAACGCCGTCGCTCCAGGGAGCCTAGACTTCCTGCTGGAGGAGAACTGAGCAGGTTCCTCAGGAGGAGagccggtgttgtgccaaattcagcacccccgccaggaaaagcaccctctctcggagcgtatttctaagtaaagttaaattgcttttatcaagaagacggtgTGTAAAATTCGGCACTACACCGGGTTTCTCAGGAGGAGAGCTGGGttcctctcagtctctctctgttAGTGCAATTTAAACTTTAGATACTATTTAGTCTGCAGTGAATTACCagcttttagttttagtaaatgtctTTAGATTCTGATAATCTTGAACTTTCAAACCACAATTTGACCAAATTCTGATCCTGTTTAAATATTagtatgtacatttttaaatatagtttttgcAGTTCTTGAGATTTCAGCACCAAACCAGCTCCAGAATAATTGGTCTGATTGGAAATGGCATGCTAGAGGTTTTGAGCTTTATCTTGACTCTGAAGTACATTGAGacttattattctttttaatatttttcttattttattcttttgaaACATtccataaatacatacagttaTTCAAacatatctattttatttttatttacttaaatttaattcaattttagcACAATACTTCCTAACATTCCTCTGGTTTTCCTTTCTCAGCCACAGCAGTTCACCAGGAAGTACTGTAGTTCATTTATGAAGCAggacttcataataaaagcccgTGTTCAGACTGTATTTGAACCGGATTTGTTTCTCAGatcagatctgttgagatgACTGTCACTGGTACTGTTATATGAAAgtgatcagattggatttgtGTATCTGAATGgggtacactgcaaaaaaactatcggcaaaaaaagtacatttagacgtgcttatattaagcaaaacgcaaaagtttttttgtaaGATTTCTTACCAAATGTCTCAAAATGAGAGAAATAAgatttaaatcaagcaaaaatcactgATTTCTTGCCTTAAATATGTGAGGAATTGATTTGTGTTTTCTGTCAGTGTAAATAATCACGTCTTGGTGCtttaagagaagagaagaatctCTCAGGGAGGATCAGACGTCTTTAAAAACGAGCTGAAAGAACCTGAAACTGGACATTTTTCCTCTGTCGTCTGCAGTCCTCTGCTGTTGTGGGTTTTTCTAAGGTTTATTCATCTTTCTGAGGAAATATAATATGAGATAAAGCAGGAGAAAGTGGAACTCGGTCTCGTGTAAAGAATGGAAGCTGTAATAAAGGTAATGAGTGAAGAAGAAAACTCAAACACTcaaatataatgatatatttaGTGGTTGGAGCTTCTGTGTAATGTTCTTTCAGtgtcttgtttcttgttttttatacttttcttttgaaaaaatgtgtttctgaGCTATTCAGACTGTTAATAAGGGGCCAATGTCTCTcttttaatgactttttttcatttactgcACAATTTTACtctgtttgctttgtttaaagaaataaaacactatTCTTGCAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176514 lncRNA upstream 26868 9193450 ~ 9193774 (+) False spryd3
TU176512 lncRNA upstream 27789 9192027 ~ 9192853 (+) False spryd3
TU176490 lncRNA upstream 54024 9161478 ~ 9166618 (+) True G130495
TU176528 lncRNA upstream 74799 9145490 ~ 9145843 (+) True G130527
TU176489 lncRNA upstream 111957 9079596 ~ 9108685 (+) True G130494
TU176540 lncRNA downstream 3788 9228499 ~ 9229092 (+) True G130538
TU176555 lncRNA downstream 43256 9267967 ~ 9338361 (+) True G130547
TU176547 lncRNA downstream 54724 9279435 ~ 9279813 (+) True G130540
TU176564 lncRNA downstream 61566 9286277 ~ 9334135 (+) True G130553
TU176570 lncRNA downstream 158232 9382943 ~ 9383194 (+) True G130559
XM_022677055.1 mRNA upstream 26864 9132575 ~ 9193778 (+) True spryd3
XM_022677056.1 mRNA upstream 26864 9132575 ~ 9193778 (+) False spryd3
XM_022677054.1 mRNA upstream 26864 9142539 ~ 9193778 (+) False spryd3
XM_022677050.1 mRNA upstream 113357 9100436 ~ 9107285 (+) False zbtb39
XM_022677063.1 mRNA downstream 5819 9230530 ~ 9242781 (+) True csad
XM_022677066.1 mRNA downstream 20761 9245472 ~ 9253071 (+) False znf740
XM_022677065.1 mRNA downstream 20766 9245477 ~ 9253071 (+) False znf740
XM_022677064.1 mRNA downstream 20767 9245478 ~ 9253071 (+) True znf740
XM_007242257.3 mRNA downstream 81443 9306154 ~ 9316293 (+) True nfe2
TU176519 other upstream 100860 9117170 ~ 9119782 (+) True G130518
TU176443 other upstream 361972 8853694 ~ 8858670 (+) False LOC103024807
TU176364 other upstream 656067 8563650 ~ 8564575 (+) True G130413
TU176159 other upstream 1126589 8092984 ~ 8094053 (+) False LOC103037383
XR_002650868.1 other upstream 1611759 7601605 ~ 7608883 (+) False lzic
TU176541 other downstream 91527 9316238 ~ 9322080 (+) False nfe2
TU176542 other downstream 91527 9316238 ~ 9319575 (+) False nfe2
TU176928 other downstream 532241 9756952 ~ 9757351 (+) True G130844
TU176943 other downstream 631695 9856406 ~ 9871591 (+) False LOC111194075
XR_002650874.1 other downstream 643377 9868088 ~ 9871772 (+) True LOC111194075

Expression Profile