RNA id: TU176541


Basic Information

Item Value
RNA id TU176541
length 1384
RNA type TUCP
GC content 0.51
exon number 11
gene id nfe2
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9306154 ~ 9322080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAAAACGGTAAGAAGCTTTATTTCAACTTCGTTTGGTTGAAGTTACACATAATTAGTACTAAACTGAAAATCCACATAAAAACCTAAATTTCATTCGGAATGCGTTTCcacaaagaaaaaggaaaaaaagaaaagtatcaGCATGACGTCATGAAACTGAATGCAGGGAGTCCCACTCATGATAGCTACTGTACACctcttctgattggctgagcagtCTAGAAGGTAAACCTGCCGCTGCCCTGTCAGCCCTCTCGCTCTCCTGTCTCCTCTCCTAAGTACTGAGTCCTTCAAGGATTAAAACCGTCTGCCTCCACCAGAACCACCGTATCCACCACCATATGGGCCACTGTTCCTGCCTCCTCCACTACCACCAAAGCTTCCCTTCATTGGGCCATAACTGGACTGCTGGTTGTTGTAGTTGCCAAAATCACTGTAGTTTCCActgccaccaccacTGTTGTAGTTGTCGTAGCCGTTTCCACCGCCGCCatatcctcctcctcctcctcctccaccaccttGGTTGCCATAGCCCTGTCCACCACCATATCCACGGTTTCCTCCATAGCCAGGGCCATCTCCACCACCATAACCACCACCACTACTGCCTCCAAATCCATTATTGTAGTTATCTCCACCACCGTAGTTGCTTCTTCCACCTCGACCACCGAAGTCATCTCGGCCACCTCTGAAGTCGTTGTTGTAACCATCGTTACCGTATCTACCACCGAAGtttcctccaccaccaccaccgccgcgtcCTCCTCCTCTCATGCTGGAATTCTGCATCTCCTGCCTGGAGAGAGCTTTCCTCACTTCAGAGTTGTGGCCGTTTATCGTGTGATATTTCTGGAGTCGTGGTCTGAGAAGGTGACGAAGGCAAAGCCTCTTTTCTTTCCAGAGCCGCGGTCGACCATTATTTCAATAGCTTCGATCCTCCCGAACTGGTCGAAGTAGTCGCGGAGATGGGACTCCTCTGTATCTTCTTTGATGCCGCCCACAAAAATCTTTTTTACGGTCATGTGTGCAAAGGGTTTGTTGGAGTCCTCTCTGGACACGGCTCGTTTGGGCTCCACGAGTCTCCCGTCCACTTTGTGGGGGCGTGCGTTCATGGCAGCATCTACTTCTTCCACATTGGCGTAGGTGACGAACCCGAAGCCCCTGGACCTTTTGGAGTTCGGGTCTTTCATGACCACAGTCCGTCAGTGTTCCCCATTGTTCAAAATAGGCCCTCAGACTGTCGTCCGTCGTCTCGAAGCTCAGGCCTCCAATAAACAGCTTCCTGAGCTGCTCGGGACCTCGTGCTTTACTCTCGTTCGACATGTTGCACAGCAGCCCTCACCAAACTGCGCCACACACAATACGACGAAAACGCcgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176547 lncRNA upstream 36425 9279435 ~ 9279813 (+) True G130540
TU176540 lncRNA upstream 87146 9228499 ~ 9229092 (+) True G130538
TU176514 lncRNA upstream 122464 9193450 ~ 9193774 (+) False spryd3
TU176512 lncRNA upstream 123385 9192027 ~ 9192853 (+) False spryd3
TU176490 lncRNA upstream 149620 9161478 ~ 9166618 (+) True G130495
TU176570 lncRNA downstream 60863 9382943 ~ 9383194 (+) True G130559
TU176816 lncRNA downstream 149536 9471616 ~ 9474358 (+) True G130758
TU176820 lncRNA downstream 161241 9483321 ~ 9483528 (+) True G130762
TU176821 lncRNA downstream 166446 9488526 ~ 9489598 (+) True G130763
TU176869 lncRNA downstream 293814 9615894 ~ 9616100 (+) True G130806
XM_022677066.1 mRNA upstream 63167 9245472 ~ 9253071 (+) False znf740
XM_022677065.1 mRNA upstream 63167 9245477 ~ 9253071 (+) False znf740
XM_022677064.1 mRNA upstream 63167 9245478 ~ 9253071 (+) True znf740
XM_022677063.1 mRNA upstream 73457 9230530 ~ 9242781 (+) True csad
XM_022677061.1 mRNA upstream 91527 9220634 ~ 9224711 (+) True LOC103043576
XM_007242258.3 mRNA downstream 601 9322681 ~ 9332418 (+) False cbx5
XM_007242259.2 mRNA downstream 602 9322682 ~ 9332418 (+) True cbx5
XM_022677072.1 mRNA downstream 296278 9618358 ~ 9645766 (+) True LOC111194074
XM_022677073.1 mRNA downstream 304929 9627009 ~ 9645766 (+) False LOC111194074
XM_022677081.1 mRNA downstream 452030 9774110 ~ 9793416 (+) True LOC103044467
TU176519 other upstream 196456 9117170 ~ 9119782 (+) True G130518
TU176443 other upstream 457568 8853694 ~ 8858670 (+) False LOC103024807
TU176364 other upstream 751663 8563650 ~ 8564575 (+) True G130413
TU176159 other upstream 1222185 8092984 ~ 8094053 (+) False LOC103037383
XR_002650868.1 other upstream 1707355 7601605 ~ 7608883 (+) False lzic
TU176928 other downstream 434872 9756952 ~ 9757351 (+) True G130844
TU176943 other downstream 534326 9856406 ~ 9871591 (+) False LOC111194075
XR_002650874.1 other downstream 546008 9868088 ~ 9871772 (+) True LOC111194075
TU176945 other downstream 600937 9923017 ~ 9928014 (+) False LOC103038829
TU177643 other downstream 2169483 11491563 ~ 11502723 (+) True G131313

Expression Profile