RNA id: XM_022677050.1


Basic Information

Item Value
RNA id XM_022677050.1
length 5272
RNA type mRNA
GC content 0.45
exon number 3
gene id zbtb39
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 9099492 ~ 9107285 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAGCGTTGCTAGGATACGCTACATGTGTTATTGGGGAGCGAGTGGTTGCTTAGTTAGCATAATTAGCTTGCTAGtTAATCTGAGCTGCAGTGCCAGCCATGCGGATCCGGCTGCAGGGCTCGGGCCATGCAGCCCTTCTCCTCACCGAGCTCAACCGCTGCCGTCTCTCCAGGCTGCTCTGTGATGTGGTCCTGCAGGTTGGAGGACGTTCCTTCCCGGCCCACCGCGTAGTTCTTGCCTGTGCTGGATCCCATTTTCACAGTCTGTTCTCCAGGAACTCTTTCAGCCAGGGTGGAGGTCCGATCACCATCTCTTTAGACTTCATCTCCGCGGCCAACTTTGAGAAAGTCTTAACGTTTATTTATACGGGCGAGATCCTCACAGACTTGATAGATGTCGGGGTGATGTACGAGCTGGCTGAAAGACTGGGCGTGAGGGAGTTGGTGCGTGCTTGCCATGCTACCTTTCCTGACATGAAAAGCTCAGATGGAGACGTAGATCCGGACATGGCTCCTGCCACTACCGTGGCCTCTGCCTCCGCTTGCTCTTCTTCCGCGGCCTCCTGCTCCTCGCTGTCGTCTCCTGCTGCTCCGACCCCAATCGCTCCTTCCCCGCTCCCTCAGAGCAGAGGGTCCAGGCTGAACCGTGCTCACGTGGCTCCATTATCGTTCTCTCAGTCCCCTAAACCACAGGACGGCTTTCAGTTGCACTTGGGTTACGGTCAACTGGTCGACAGCAAGCATAGCCCATTGGATGGCCATCATCCTCAAGCTTCAGAGATTCTTCCAGGTCTGACTCTGCCGCTTAAAACagagcagcaggagcaggaagaggaggagaaagtgGATGAGGCTGATAACTCAGAAGACCAAGCAGTTGTTAGCGAGAGCAGACCTGTGCTAACAGAGGCATGCTCCGTTCCTGACTCCTCAGCACAGGCTGGAGGAGAAACCTGCGCTCCATCGTCCTCTTCTGGAGATCCTCTGGAAAACCTGCAGCTCAGGGCGGTCGAAGGTGGTGTTGGACTTGGAGAAGTAAAAGAGGCTGTTTTGTTCGGGGAAGAGGATGATGCGGAAAAACAGAGCCTGCAAGAAGGGTCAGCAGAGGATGGAGATCAGTGGAGGGCGCTGGCAGGGGACATAATCGAACTGAGCGACGATGAAGAGAATTATATCGAGGAAGACGAAGAAGACGAGGAGCTGATGTGTATAGAAAACGGTGGAAACTGCACATCAGCCAGTCTGGGTCAGCTGCCTTCACTGTCACAGCCCTGTAAAGCCTGTGGAGTTTTGCTGCCGGCGGACAACACCGCCCTTCGCTCTCACGCAGAGACGCACCTCTCCGAGACGGGGAGCTGTCGAGTGTGTGGCGCTTCCTTTCCGGACCGTGCTGCCAGCGTCACCCATGCCCTCACACACGTGGGCATCATGCTGTTCTCCTGCGACATCTGCGAGCTCCAGTTCTGCAGCGAGGCCAAACTGATCCGACACAGGCGCCAGTCGGCGGCCAGGTGCGTTCCCCAGCAGCCCAGCCAGCTGAACAGCACCTCTCAGGGGCCTGGAGGAGAACTGCAGTGTGCTGTCTGTGCTAAAGCTATTCCTAAAGACTTTAAGGCTGTGAGGGATCACGTACAGAACCACGTGTGTTTGCGGACCCTGCGATGCGGCGTCTGCCAGTCGCTCCAGCCCTCTCGCTGTACTCTACTCTGGCACACCTTAACGCACCTCCTCCTCATCCACTCCTGCCCGCAGTGCGCCTGCCCCTTCCTGGAGCGGCCTCTGCTGGACAGACACCTGGCCATGCACGCCGAAGAAGGAGGACCGTCGAAAGAGGGCGATGGGAGCCAGGAGGGTGGAACCGAAGGCCGGGGGGAGTTCCAGTGCTTCTTGTGTCCACAGACCTTCCGATCAGACACAGCCTTCCATTACCACCTCAGCATGCACCCCAGCGAGATGCACGGTGGCCAGGCCTGGCCAGCCAAGCGCAAGGCGGACCACCCGCTGGagttttcctcctcctcttcctctcctctggAGGCCAGCGGCTTGGGCAAGTTCAGCAGCCTGGGGTTCAACCTCAACATGGGCGTCGGCTTTCCGGAGAAGGTGATTCAGGCGGGAATGCCGTTCCCGGCTGGACTTCTGCACAACGGGAGCCCCGCGGGAGCCGGGATTAAGCAGAAGTGGTACCGCTGTCGGTACTGCGGGAAACGCTTTGCGCACTCAGGTGAGTTTACCTACCACCTGCgaattcacacaggagagaagccCTACCAGTGCAAGGTGTGCCTGCGCTTCTTCCGCGGCCGTTCCACCATGATCTGTCACCTGAAGACGCACGCCGGCGCCCTCATGTACCGCTGCACCGTCTGCGGCCTCTACTTCTCCACGCTCAAGATGGTCTCCTCTCACATGGAGCTCCACAAGGACCATTTGCCTCCGGACTTCAACATAGAGGAGACTTTCATGTACAACGACCACTCCAAAGAGCCTCTCCCCAACCTGGACTTGTGAGGTTCAGTTTGCACATTTCTACTGTGCCTCGATGCTCAATGTTTAGAGACGCACCGAAAATTGGCCCGAAAATTGTTTCTTAAACTGaaaacctgtgttttttttggctAAAAACTGTTGagaaaatattacaaaacaaaagTGAGTAGGGTTTAAGTGTTTATTCATTCCTCTAACACTAcagtttttaattcagtgtgaaATTTGAGACTTgagttgtagtaaaacatgctcaacacccccagcattcccaaatacagtgcttttagccaatgctctcAACTAAcaggctatttttacaccattaacaaactcaaagtagcttcaaAAATCATTGGTAGAATTATGAGACCCTGACGTTTAAAACTAGGCATTGAgagctttaaaactgcacagatagtttattaaaacactgtttatacacctGTGTGTATACCTGCGCACtgccattttaaaattaagCCATGATAATTAATAAGCGTTGACTTATGAGCATGAATGAATAGGTAGGGTAGGAAAGGATTGCAGAATTAGTTCAGTGGAAACGCTTGAATTCTAGctgttgctaaaaaaaataacaaatagcaTAAACTTATAAACTTACCTGAAAAGGATTTACtactacctgtgcacttttaaagctgTCAGTGCTCTCAGAATTgtaccaataaagtgtggagctactttaagcttctttgttcatgtttttttgcagGGGTAACTCTATGCCCTTGTCGTTAGCGCTTTAAGCtagttgggagcatcggctaaaagcgctgtatttgggaatgctgaGGGAGAATAGAGTGGAATAttagacaaaagtttgtacttgttatcgTGTTTCACTACAACCTACAAGTCcgtttcacactggatttctcctataaaaaaggaaattatcAGAATTTTAAaacttcttttattattaaaggtaGACTAGCACAGAAAGTGCTTAAAAATCCAACACTATATACAGTTTAATTGGAATTGatgattagaataaaataaactcggttattcaataattaaaaaaaaggcccATTTAAAACAAACGCAAGTGTTTTTTATTCGGTTTCGGTTTGGCCAAGAGTTCAGTTTATCACTAATAATACTGTTGCTCATTATCTGTCACTGTAATGTCTGTAGATTTTAGGATGTAGCTAAATATTTATGTGTTCGGGAAAGGAGATATTTATACTATAAGGATTGGGACATTTTGCTGCctaatagaataaaaacaaagccACTGTCAGCATGTTATTATCACAATAAGGTATGttgcatttttacaaaaaaatatcttaTAAAATGCGCTAAAATTGACAAGTCATTATTATCACACAGCAAGTCGTATcttgttattttgagggcaTTAAAAATGACAGTTATTTAGTTATGCAGAAAATTGTGTTGCTCATTATGCAACAATTTCCTTAAACTTTGGTACATTTTGGAATATTCTGACCCATAATTTTAATTacttcacatttatttaaataaatccaGTGCAGTAGTCGTAGTATTaagttatttattatatattatttgcaATGTAATGGCAATACATTATCTTACTAAGCTCAGTTTCTTTAACAGTTAGGCTAATTTGggttaatgttaaaaaatatagataatacaaattctgtttttactgCCTTGCTTATAGACTGACacaattagttattattattattttttaagttgaatacttttaaaatacttctcTATCAATAGttttatattgattattttgtcaaataatACTTTAGTGGTATAATGAAAGTTTTTGATAGGCagtgccactatgatcgggaaatcgctggttcgactcccagtcatgcagcttgccatcagctgccagagccccgaaaGAGCActattggccttgctctttctgggtgggtagatgacgctttttcccctcatcacttctagtaTGGAGTATGGAGGAGAAAatattgaagaagaaaaaaatttaaataaataaacaaaaatctaaactaattggtacatttcttaaaaataaattatttatacctGTTTGTTTTCACAACTTGTAATAACAAGATCATAATAACCAACATTGATtgcaatatttagtttttacatGCCTCATAATAATAAGATTTTTCTTGTAATTGTATATTCTGATATTTTTAGCatacacttttataaaaataacaaaatcatagtaattcattcattaagtatgctgtttttttaacctGAGACACAACATCTCTCCTCTCATAATACATATTAATGCTCAATTTTTAGTGCATCATCTCATAATAACACTTTAACATGTTGTTTATTTCACAGTTACAGCAGAGCATCCTGTAGTAAggacatgctgaggctttatttttgtgattattttGGCAGCAGTGTGTCTCTAGTTTTAAAAAGAGTCTGAATTTGACTTTTTTCAGTCGGTACTGTTGTTCTGTCTCCACATGGTGGCAGAGTTTCGTTATTCTCACACGGGTGAGAATCTTCTCCTCTGCTGATCTCCCGGCAGACGCTGAGCTCCTGAGTGTTAGTTTAGGATTACCTCTTGATGTTCTTCCTTCAGCTCATCCTGTACACAGTATAAGCTAAAGTATATATGACTAGTTCAGAGTATTACATCCACATATCTCTCTCACGGGTGGACGTTACGGAAGTTACGGAAGCTTTACCTTCGTTCAGCTTCTTCTTCCGTTGGCGCGAAACAGCAGCGAGTTCTGGCTGTTTTGCTTGTAGAGTTAGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176492 lncRNA upstream 45527 9051703 ~ 9054909 (+) True G130497
TU176491 lncRNA upstream 49067 9050835 ~ 9051369 (+) True G130496
TU176501 lncRNA upstream 55884 9044186 ~ 9044552 (+) True G130505
TU176500 lncRNA upstream 56329 9042119 ~ 9044107 (+) True G130504
TU176496 lncRNA upstream 70705 9028045 ~ 9029731 (+) False G130500
TU176528 lncRNA downstream 38205 9145490 ~ 9145843 (+) True G130527
TU176490 lncRNA downstream 54193 9161478 ~ 9166618 (+) True G130495
TU176512 lncRNA downstream 84742 9192027 ~ 9192853 (+) False spryd3
TU176514 lncRNA downstream 86165 9193450 ~ 9193774 (+) False spryd3
TU176540 lncRNA downstream 121214 9228499 ~ 9229092 (+) True G130538
XM_022677048.1 mRNA upstream 3137 9067252 ~ 9097299 (+) False LOC103022619
XM_022677055.1 mRNA downstream 25290 9132575 ~ 9193778 (+) True spryd3
XM_022677056.1 mRNA downstream 25290 9132575 ~ 9193778 (+) False spryd3
XM_022677054.1 mRNA downstream 35254 9142539 ~ 9193778 (+) False spryd3
XM_022677061.1 mRNA downstream 113349 9220634 ~ 9224711 (+) True LOC103043576
XM_022677062.1 mRNA downstream 113357 9220642 ~ 9224711 (+) False LOC103043576
TU176443 other upstream 241766 8853694 ~ 8858670 (+) False LOC103024807
TU176364 other upstream 535861 8563650 ~ 8564575 (+) True G130413
TU176159 other upstream 1006383 8092984 ~ 8094053 (+) False LOC103037383
XR_002650868.1 other upstream 1491553 7601605 ~ 7608883 (+) False lzic
TU175967 other upstream 1611195 7478355 ~ 7489241 (+) True G130120
TU176519 other downstream 9885 9117170 ~ 9119782 (+) True G130518
TU176541 other downstream 208953 9316238 ~ 9322080 (+) False nfe2
TU176542 other downstream 208953 9316238 ~ 9319575 (+) False nfe2
TU176928 other downstream 649667 9756952 ~ 9757351 (+) True G130844
TU176943 other downstream 749121 9856406 ~ 9871591 (+) False LOC111194075

Expression Profile