G131351


Basic Information

Item Value
gene id G131351
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11632509 ~ 11635237 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU177686
GGTACATTCTTGCAGCATTAGCTGTAACACTAAAAGCTTTCATCAGAGgacacagcaaaacacacacaatcattgCATAGCACCAGTTTCACTCAAACAGCAGAGCTCTGGAATGTGAGCAGGCTAGTGTAGTCTGGAATATACACAAGAGTAGTGAGCTAATGGAGGCACGGATCCATTACccattaaataaaatcagacttcatacaataaaacattaaaaatatgacaaaaggactaatataataaagaataaaatatatctgCACTTCACCCCTGACAGACTGACACCTTAGTGTTATGCCTTGTTTGTGTATCATCACatcctgtatatatatttagcataaCCTCTAGTGTCCTTCATGAAATCACACCTGTACACTTTCCAccatactcactcacacacacacataccaccaTACATAGTTTTAGTTTCCCTTTGCCTTTTATGTTACTCAACCTTAAGCCCTTTTTTTGGATGGGATTGTTTTACCTGGTGAGGAGAATTGATGCAATAATGCAtttaggattaaaaaaaaaaaaaaaaaacagcacaaattGCAGAAATGGGAGCGGCTACTCGATTTAAGCACTGCTATCGCctccaaaaaacaaacaaataaaaaaaaaagcgattGTAATTAATCCTGCAACACACTttgtaataatataacattagtttGAAAATTAGCAGCTATGTGTTCAGAATGCTTGgatcacactacacaactttttgagAAGTTTGTGAAGTTGTGCCACAATCCAGAGCAGACAATCTCTAAAGAGGAGAATAACCA
>TU177688
agagagagagagagagacataattaaaggctttaattaattaattactccCTACTGTAAGTGAATGTAGTGATACTACCCTCTTGTGGACACGCTGTGATAAGGCCGCTGTCCATGGTGCTTGGAAATATGACTGAACCTGAAACTGCAAGTCACGATTTTTTCTCGCattaaatacacagaaatacaaCACGTTCACGAACAGGGTGTGGtacctttatattttattattacaaatattcaGCTTTAACCTTAACAGCAACCATTCGCCTTCCTCAGATtagtaaaatatacagtaccagtcaaaagtttggacacaccttctcattcaatcatccagactataaaggaacacataaggaatcatgtagtaacttagaagtgttaaacaaactaaaatactataataaatgtgaagcatttaggtgctcttatctggggagctgttaacttgtggtttctgagtcTGGTAACTCTTGGGAACTCTTGTTTTTCCTTGCCtggtgagtgccagtttcatcataattgTAAGTTTCTTTATAcctgcacttgaggataattCCTAAAAGTTCCTAAAATGTTTAGGATTGACTGCCCTTAAattattaaagtaatttttcttcgttatttagttgagtagttgttgcttctcataatttTGGATTAGaccattatatttaaatattcactattcactgtatacctgtaactctacctcttcactactttactttaactgatgctctcaaacacattattcagatgagttcagcacagctgttaactgaaagcctgtattccaggtgactctacctcataaaactgactgagaaaatccagcagagatgtgcagaaCTGtttaatctaagcaagagatgctTAAAAACCTATaagaatcttaaatataaaacatattctactTCGTTTAACACGTTTttgtatactaaataattccatatgtttttattaatagttttgatgactttagtattttaatctacaatgcaggacattttttttaaataatgaaaaaccactgaatttaaaatgtgtccaaacctttgactggtactatacatcatatcatcactgtccattgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177686 False 797 lncRNA 0.36 1 11634441 11635237
TU177688 True 1101 lncRNA 0.33 1 11632509 11633609

Neighbor

gene id symbol gene type direction distance location
LOC103032800 lrp1,LOC108425568,LOC107593902,LOC107673053 coding upstream 269158 11185748 ~ 11363351 (+)
LOC103046525 LOC108425571 coding upstream 504589 11115529 ~ 11127920 (+)
fitm2 NA coding upstream 518545 11110370 ~ 11113964 (+)
ada ada coding upstream 643009 10969289 ~ 10989500 (+)
LOC103044697 gdi1,LOC108276388,LOC108425579,LOC107564645 coding upstream 745423 10874498 ~ 10887086 (+)
LOC103033368 LOC108425561,LOC108276129,LOC107593912,LOC107673097,LOC107737522,LOC107591068,LOC107716150 coding downstream 16272 11651509 ~ 11665934 (+)
LOC103033689 avpr2,LOC106567019 coding downstream 73116 11708353 ~ 11742030 (+)
LOC103045529 LOC108425554 coding downstream 171563 11806800 ~ 11909123 (+)
LOC103036846 LOC103036846,LOC108425493 coding downstream 333544 11968781 ~ 11970846 (+)
LOC103037687 NA coding downstream 357005 11992242 ~ 11994812 (+)
G131350 NA non-coding upstream 1690 11630032 ~ 11630819 (+)
G131325 NA non-coding upstream 43089 11535057 ~ 11589420 (+)
G131340 NA non-coding upstream 54227 11575393 ~ 11578282 (+)
G131329 NA non-coding upstream 76884 11552913 ~ 11555625 (+)
LOC111194082 NA non-coding upstream 116205 11514191 ~ 11516304 (+)
G131357 NA non-coding downstream 11223 11646460 ~ 11647105 (+)
G131361 NA non-coding downstream 41142 11676379 ~ 11679829 (+)
G131367 NA non-coding downstream 84495 11719732 ~ 11790257 (+)
G131370 NA non-coding downstream 119328 11754565 ~ 11755732 (+)
G131380 NA non-coding downstream 149370 11784607 ~ 11793086 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 129786 11491563 ~ 11502723 (+)
LOC107197146 NA other upstream 802951 10815860 ~ 10829558 (+)
LOC103038829 NA other upstream 1704276 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 1711514 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 1760737 9856406 ~ 9871772 (+)
LOC111194085 LOC108425553 other downstream 287103 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 605459 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 1053917 12689154 ~ 12763710 (+)
G131677 NA other downstream 1278254 12913491 ~ 12940847 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 3532771 15168008 ~ 15172897 (+)

Expression


Co-expression Network