RNA id: TU177686


Basic Information

Item Value
RNA id TU177686
length 797
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G131351
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11632509 ~ 11635237 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTACATTCTTGCAGCATTAGCTGTAACACTAAAAGCTTTCATCAGAGgacacagcaaaacacacacaatcattgCATAGCACCAGTTTCACTCAAACAGCAGAGCTCTGGAATGTGAGCAGGCTAGTGTAGTCTGGAATATACACAAGAGTAGTGAGCTAATGGAGGCACGGATCCATTACccattaaataaaatcagacttcatacaataaaacattaaaaatatgacaaaaggactaatataataaagaataaaatatatctgCACTTCACCCCTGACAGACTGACACCTTAGTGTTATGCCTTGTTTGTGTATCATCACatcctgtatatatatttagcataaCCTCTAGTGTCCTTCATGAAATCACACCTGTACACTTTCCAccatactcactcacacacacacataccaccaTACATAGTTTTAGTTTCCCTTTGCCTTTTATGTTACTCAACCTTAAGCCCTTTTTTTGGATGGGATTGTTTTACCTGGTGAGGAGAATTGATGCAATAATGCAtttaggattaaaaaaaaaaaaaaaaaacagcacaaattGCAGAAATGGGAGCGGCTACTCGATTTAAGCACTGCTATCGCctccaaaaaacaaacaaataaaaaaaaaagcgattGTAATTAATCCTGCAACACACTttgtaataatataacattagtttGAAAATTAGCAGCTATGTGTTCAGAATGCTTGgatcacactacacaactttttgagAAGTTTGTGAAGTTGTGCCACAATCCAGAGCAGACAATCTCTAAAGAGGAGAATAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177688 lncRNA upstream 832 11632509 ~ 11633609 (+) True G131351
TU177685 lncRNA upstream 3622 11630032 ~ 11630819 (+) True G131350
TU177659 lncRNA upstream 45021 11535057 ~ 11589420 (+) True G131325
TU177675 lncRNA upstream 56159 11575393 ~ 11578282 (+) True G131340
TU177663 lncRNA upstream 78816 11552913 ~ 11555625 (+) True G131329
TU177694 lncRNA downstream 11223 11646460 ~ 11647105 (+) True G131357
TU177699 lncRNA downstream 41142 11676379 ~ 11679829 (+) True G131361
TU177706 lncRNA downstream 84495 11719732 ~ 11790257 (+) False G131367
TU177711 lncRNA downstream 119328 11754565 ~ 11755732 (+) True G131370
TU177722 lncRNA downstream 149370 11784607 ~ 11793086 (+) True G131380
XM_022676742.1 mRNA upstream 271090 11185748 ~ 11363351 (+) True LOC103032800
XM_022677144.1 mRNA upstream 506521 11115529 ~ 11127920 (+) True LOC103046525
XM_007238822.3 mRNA upstream 520477 11110370 ~ 11113964 (+) True fitm2
XM_022677175.1 mRNA upstream 644941 10969289 ~ 10989500 (+) True ada
XM_022677156.1 mRNA upstream 747355 10874498 ~ 10887086 (+) True LOC103044697
XM_022677160.1 mRNA downstream 16272 11651509 ~ 11665934 (+) True LOC103033368
XM_022677186.1 mRNA downstream 73116 11708353 ~ 11742030 (+) True LOC103033689
XM_022677200.1 mRNA downstream 171563 11806800 ~ 11908203 (+) False LOC103045529
XM_022677194.1 mRNA downstream 171565 11806802 ~ 11909123 (+) True LOC103045529
XM_022677193.1 mRNA downstream 182160 11817397 ~ 11908203 (+) False LOC103045529
TU177643 other upstream 131718 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 1706427 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 1762669 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 1762850 9856406 ~ 9871591 (+) False LOC111194075
TU176928 other upstream 1877090 9756952 ~ 9757351 (+) True G130844
TU177886 other downstream 316351 11951588 ~ 11956334 (+) True LOC111194085
TU178139 other downstream 1278254 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 3532771 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 3532771 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 3547113 15182350 ~ 15183567 (+) True LOC103024219

Expression Profile