RNA id: XM_022677200.1


Basic Information

Item Value
RNA id XM_022677200.1
length 3703
RNA type mRNA
GC content 0.57
exon number 22
gene id LOC103045529
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11806800 ~ 11909123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGCTGGATCTGAATGAATGGAGGAGAAACAGACTGAGGGCTGGGAGTGAGGAAGAGCTGCAGCGGAGCGCTGAGGTCCTGATGTTCTGATGTTCCTCCAAACAAACCAGCAGGAGATAGAGCGGGATTTCTCCCCGCGGAGGAGCCATGCTGCAGTAACAACACACCGGAGAGGAGGAGACCGAGACCGAGAGAGCGGCGGGGAGAACCGACCGACCGACCAACCGACCGACTGACCGCAAGCTACAGGCAGCCGTTGGTTTTCTATCTCAGTTGGAGTAAATGCAGCGCTAGATGGTTCCCAACAAGTGGACTATGAATCCAAGTCTCCACAAATCTCCTCCCAGGAGCTGGCTCGGGATTCGGCTACGTCTCAATGAGAAGCCGACGCaggaggaggagtgtgtgtgtcagcatcCAGACTGCACTGAGCGCCGCCGCGCCTCAAAGgtgtgccATCATCCTGACTGTCAGGACCTGAACAACAAAAGCCCTCTTCACCTGTGTGAGTCATGTGACTCTCGCTGCCACCTGGACGAGACGGACAACATGCATTTTGACCGGCACCCTCGCTTTGACCTGCAGCCACAAGGTTCCATCCTGGCGCGGAATGTGTCCACACGCTCCTGCCCCCCGCGCACCAGCCCCCCTTCAGACCCTGATGAggaagagggaggaggagggggcaCTGAGCGAGGGGGACGTAAAGCAGGAGGGATGAAGCTGAGGCGGGACCGGAGGCGCTACACTGATGACCCAAGCAAGGAGTGCTTCACCCTCAAGTTTGACCTGAACGTGGATATAGACACAGAGATTGTTCCAGCGGTGAAGAAGAAGACGCTGAGAGAGGTACTGGGACCAGTGTTTGAGCGGAAAGGCATCGAGTTATCCCGAGTAGACCTGTTCCTGGACCAGTCCAACACTCCTCTCTCGCTCCAATTTGAGGCCTACCCCTTCGGAGGGCACTACATCAAAGTCAAAGctcgTCCGGGTGATGAGCTGAAGGTGGAGCAGGGAGTGAAGGACCTGCGCTCTCTCAGTCTTCCCAATATGAAGAATTCGAGCGGGGGCAGCCCGTACATCCTCGCCCCCACCAACGAGAAGGTGGAGCACACTTCCCTGACCCAGCGAGAGAGCGTGGACATACTGGGTCAAACACGTCGGACAAAAAACATGACCAAGTTCCTCGGTGATGAAAACATCCCGTCTCCAGACTCTCTGGCCGGGCTAGGGGGTTCTCTTCCCAGCCTCCCTCCTGGATTTGATAACCGCAAGAACCGCGCAGCCAGCCGCTTTAGTGGATTCTTCTTCCCCGGCTCTGGAAAGGAGGTGGACCGCGTGGAGCAGCTGAATAACAGGCTGCAGATGTACACGTTCCACGGCCTGCCCAAGGTCCCTCCCCAGCCCTCCTTCCACCACGACTcctgggaggaggaggaggacgagccCAACCTGACGCTGGAGGAGAGCTGGCAGAATCTGCTGGAGAATCCAGAGACTCTGAGCGAGCGCCAGTTGCATCAGCAGGAGGCGATATGGGAGCTGCTTCAGACTGAGGCCACGAACCTCAAGAAGCTCAGGGTTATCACTGATCTGTTCCTGTGTGGCCTGCTGAACCTACAGGACTGTGGGCTACTGGTTGAGGTGGAGCCGGCTAAACTCTTCAACAACATCCAGGACCTGGTCCGAGTGCACACGGCGCTGTGGAACCAGGTAATGCTGCCAGCACTAGAACGGGCACGCCGAGATCGGAGCCTGCTGGACCCAACTGACATGCACCTGGGCTTCCAAACGTTTTCATCACGGTTCGAGCCCTACCTGCGATACTGCATGGAAGAGGAGAGCTGTATGGAGTACATGCGCACACAACTGAGAGACAACGAGCTCTTTAAAATCTACATTACATGGGCTGAGGGCAACAAACAGTGCAACCGGCTGAAGCTGGCTGACATGCTGGCGAAGCCACACCAAAGACTGACCAAATACCCACTGCTGCTCAAAACCATCCTGAAGAAAACTGACGACAGTGCTGCCAAAGATGCTCTCCTCAATATGgtggtgtgtgtggagagcTTCATCAACAGCGTGGACTCTAAGATGCTGCAGAGGCAGGAGAAGCAGAAGCTGGCGGCGATTTCGGCTCGGGTAGAGAGCTACGAGGCAGTGGAGGGAAGCAGTGAGGAGGTTGAGAGGGCTCTGAGAGAGTTCAACCGCATTGACCTCACGGCTCCTATGATAGACACTTCTCCAGAGGAGACCAGACAGCTCCACCTGGAGGGGGCGCTGCGCATGAAAGAAGGAAAAGACAGCAGGATGGAGGTTTACTGCTTCCTCTTCACTGACCTCCTGCTCATCACCAAACCAGTGAAGCGCTTAGAGAAGGTCAAAGTGATCAGACAGCCTCTACTCATCCATAACATCGTCTGCAAGGAGCTCAAAGACCCGGGCTCTTTTGTCCTCATCTACCTCAATGAGTTCAAAAGTGCTGTGGCTGCGTATTCCTTCCAGGCCAACAGCACCTCCCAGGGGCGAAGCTGGGTAGATGCCATCTGCAATTTGCAGAACCAGCTCCAGCGTCTGCGCTCTGAGGAGGCTCGGCGGCGGCAGGCCAGACTGAAACAGAGACTGGAGGCTGCAGAGGAAGAtgagggaggagaggagagctGTAACTCCACTGCCAGCTCCCCACGACTCCCAAACAAGGAGCAGCGCAGTGCAGGAAACTCAGACGGCTCAACGGAGACTCTGTCTGTGGTAGAAATAGAGGATTCTGGGGCGAGCTCAGATGCCTCCGCGCTGCAGGCTGACCCCGGCGCCCCCCGCTATGAAGCCCCTTCTATTGTCCTCAGTAGCTCTGAACCCCAGCAGATCCCACCTGCTCCAGAGACCGACCCCCTGGACGGGTCAGAGCTGGACCCACAGTACCGCTCTCTCTCCATGGACAGCGCCTACGGCACCCTCTCGCCCGAGTCCCTGCTGGAGCTGCAGAGCCGGACGGCCACCAGCGAGGGGGACAGCACGGAGGAGGACGGAGAGGCAGACACTGAGGAGGAGGGAGGAAGCACAAAGGCAGAAGATGTGACCACAGCTGAGGAAGAGAATGAGGAAGaaagggaggaagaggaggaggaggaagaggaagagagctCGTTTGGCTCTCGGCTCTCAGTGGCTCACCGGTTAAAGCCCAGACGGAGACCCCCGGTCAACTTCCGTCTGCAGAGCCTGCAGAAACTGGAGTTCAAGTCCCATTCTGAGGACAACCTGCTGCAGCGCGTCCACGAGGAGAGCAAGCACAGTGCAGACCAGGCTCCCACGACTGATGTTTCAGACAACAGCAGAGTGTCCAAGATGGCCGAGGGTCTGGCTTACAGCAGAAGCCTGACTGAACTAATCACCACCAACACGTTGCCGTACCGGACGGGCAGAGAGAGAGCCGAAAGCCACCGGCTGACCTCCAGCCTGCCCGCCTCCGTCTTCACAGATACACTGAGACGCAACAAAGCACAGCTAGCCAAGAACAAGAAGAGCAAGAGGATTATGGGCCGCAGAGGCTCGGACGGAGAGGTGGGCCCGCCTAGATCGACGGAGGAGGAGGGACACAGCGAAAAGAAGTCTCAACAGCACAAGAAGCTCACACTCGCACAGCTGTACAGAATACGCACCACACTGGTACTCAACTCCACTCTCACAGCCTCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177722 lncRNA upstream 13714 11784607 ~ 11793086 (+) True G131380
TU177706 lncRNA upstream 16543 11719732 ~ 11790257 (+) False G131367
TU177705 lncRNA upstream 16543 11789313 ~ 11790257 (+) True G131367
TU177711 lncRNA upstream 51068 11754565 ~ 11755732 (+) True G131370
TU177699 lncRNA upstream 126971 11676379 ~ 11679829 (+) True G131361
TU177922 lncRNA downstream 141143 12049346 ~ 12050371 (+) True G131531
TU177918 lncRNA downstream 178950 12087153 ~ 12090116 (+) True G131527
TU177999 lncRNA downstream 359919 12268122 ~ 12334090 (+) False LOC103031050
TU178022 lncRNA downstream 473412 12381615 ~ 12413992 (+) True G131595
TU178098 lncRNA downstream 680092 12588295 ~ 12592758 (+) True G131645
XM_022677186.1 mRNA upstream 64770 11708353 ~ 11742030 (+) True LOC103033689
XM_022677160.1 mRNA upstream 140866 11651509 ~ 11665934 (+) True LOC103033368
XM_022676742.1 mRNA upstream 443449 11185748 ~ 11363351 (+) True LOC103032800
XM_022677144.1 mRNA upstream 678880 11115529 ~ 11127920 (+) True LOC103046525
XM_007238822.3 mRNA upstream 692836 11110370 ~ 11113964 (+) True fitm2
XM_022677202.1 mRNA downstream 14137 11922340 ~ 11978761 (+) False LOC111194085
XM_022677201.1 mRNA downstream 14137 11922340 ~ 11954647 (+) False LOC111194085
XM_022677203.1 mRNA downstream 14137 11922340 ~ 11954647 (+) False LOC111194085
XM_022677204.1 mRNA downstream 14137 11922340 ~ 11954647 (+) False LOC111194085
XM_022677205.1 mRNA downstream 17172 11925375 ~ 11954647 (+) False LOC111194085
TU177643 other upstream 304077 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 1878786 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 1935028 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 1935209 9856406 ~ 9871591 (+) False LOC111194075
TU176928 other upstream 2049449 9756952 ~ 9757351 (+) True G130844
TU177886 other downstream 43385 11951588 ~ 11956334 (+) True LOC111194085
TU178139 other downstream 1005288 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 3259805 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 3259805 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 3274147 15182350 ~ 15183567 (+) True LOC103024219

Expression Profile