RNA id: TU178098


Basic Information

Item Value
RNA id TU178098
length 553
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G131645
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 12588295 ~ 12592758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCAcgaaatgacccaggcagggagacgaggaggcggacacaggtgcaggtaagggcgatataaataaataatttattaaataaataacaaagaaacaaggaaacgaggaacaagtaaacatgtaacaaagaaacacaaataaccaataacaaacgagtgatgataataatgataaacaaacagggaatatatacagggagcaaaactagaaaataaacacaaagcagggtatatacaagagaataacaagggaaactagaaataaacaggactaggaagactaaactgagcagggcaataaacagggaaaataacaaggaacagaggctatgaaaaaCGGAGAAACTAcgaaacacggagagacaaaacaacaggggttagtgcaaagaccgacggagacaaagtggtagacgagggctatataaggaaacaggaaacactataattagaaacacctggggcaggggcggagctacaaatgagaaacacatggaaaagtactgagacacaggggcacaggtcacgtgggacacacacagagacatgagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178022 lncRNA upstream 174303 12381615 ~ 12413992 (+) True G131595
TU177999 lncRNA upstream 254205 12268122 ~ 12334090 (+) False LOC103031050
TU177918 lncRNA upstream 498179 12087153 ~ 12090116 (+) True G131527
TU177922 lncRNA upstream 537924 12049346 ~ 12050371 (+) True G131531
TU177722 lncRNA upstream 795209 11784607 ~ 11793086 (+) True G131380
TU178107 lncRNA downstream 34974 12627732 ~ 12628616 (+) True G131652
TU178117 lncRNA downstream 96396 12689154 ~ 12763673 (+) False sall4
TU178134 lncRNA downstream 305735 12898493 ~ 12900454 (+) True G131675
TU178162 lncRNA downstream 426598 13019356 ~ 13093965 (+) True G131694
TU178186 lncRNA downstream 495795 13088553 ~ 13099448 (+) True G131715
XM_022677210.1 mRNA upstream 270917 12300034 ~ 12317378 (+) True znf217
XM_022677212.1 mRNA upstream 270917 12300034 ~ 12317378 (+) False znf217
XM_022677211.1 mRNA upstream 270917 12300073 ~ 12317378 (+) False znf217
XM_022676745.1 mRNA upstream 315481 12240696 ~ 12272814 (+) True LOC103031050
XM_022676717.1 mRNA upstream 502066 12068852 ~ 12086229 (+) True cbln4
XM_007258780.3 mRNA downstream 78869 12671627 ~ 12678080 (+) True zfp64
XM_007258781.3 mRNA downstream 161896 12754654 ~ 12763710 (+) True sall4
XM_022677214.1 mRNA downstream 172553 12765311 ~ 12823977 (+) True atp9a
XM_022677216.1 mRNA downstream 249445 12842203 ~ 12898436 (+) False nfatc2
XM_022677215.1 mRNA downstream 254362 12847120 ~ 12898436 (+) True nfatc2
TU177886 other upstream 631961 11951588 ~ 11956334 (+) True LOC111194085
TU177643 other upstream 1085572 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 2660281 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 2716523 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 2716704 9856406 ~ 9871591 (+) False LOC111194075
TU178139 other downstream 320733 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 2575250 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 2575250 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 2589592 15182350 ~ 15183567 (+) True LOC103024219
TU178729 other downstream 2647322 15240080 ~ 15240397 (+) True G132146

Expression Profile