RNA id: TU177886


Basic Information

Item Value
RNA id TU177886
length 2760
RNA type TUCP
GC content 0.35
exon number 4
gene id LOC111194085
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11922340 ~ 11978761 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CctgccatgtgtgtgtgtgaaactgtgGCTGCCTCAAACCAGGGAgGATACACACCTTTACATATTGCTGCACTTCACGGCCACCGCCATATAATTGATATACTCATCACAACGTACGGAGCGAAGGAGAATCTGCGAGACTACAGCGGACACTTACCGTCTCATTACCTGAACATACAAAAGACGACGGCGGAGGAGAGCAGTGAGATCACTCCAGGGTATCACAGCCCGGCGCAGGTGAGCGAGCGACGGAACAGGAAGATAACGTCTCTCTTTCAGTCCCGGAAAAAGTGGGGATCTGCAGAAGACCTGGCGCCCGTCCCGGAGGAGAGGACAGCGCCCCATCAGCTCATGATCCCTGCCTTCAGACCCAGGAAGTTCTCCCGCTGAACCGCCATCATAACTGGTACTTATTAGATCAGTTTGTTTGGgacagtattaaaaaacagagattGAAGTGCagaattttattgttttttcattgttatttcatattttagtttcttttaaGAAGCTCATACTGGAGGTTTGTTACGATCTTGTTCTGTGTTCAGTTATAAACCTCAGATTAGACATTAGGCTAATGTATCACATTTACAATACATTAAGctgttatatttattatgtggcaaatattaatacataattGGATAACTTTCACtatttggacaaaagtattttattcattgtttaacACTGAGTTTTTACTGTCATTCAATTTGTGTGCAGTTACATTCCTCCAAAACCATTGAGCAACATAGAACAAAAccaattgttattattttactctttattattttatattattgcaAGGCATTAGGCATGGCACCAGTAGGTTTATGTGTCTCTGCTAAagggagtcctattctattggcaatacattGACTAGACAAGCTAGGCAAgctgtgtgcatgtgcacaGCTGTATCAGCAATAGGGCAGCTGGGCAATATGAACCATATTTTATCGGATCGCGATACATTTTTCTATTGAATTGacaatactagtgcatctcaaaaattttgcctatcattaaaaagttactttcttttggtaattcagttaaaaatgagaaactcatatattataaagatgtattacacacagagtgatctattttaagcatttatttattttattgttgataattatggcttacagccaattaaaaaattGCACTGACATTTGACTTgataatagaacacagtggatcaacaccagcagatgatggacatgtctctccaaacaaaccatcactgattggtggaaacctTACACTAGACcttcgagcagtttggactgtgtgtctctccactcttcctccagactctgctcctttaatttacaaataaaatgtaaaatttactgatgatcagtgatgatattctattttcttgagatgcactagtatgctTTAATAAGCATATTGAAGATATCATCAGTTCTTAAAGAATACTCccccaactgtacatttcattgcAGAAATTGTAATAAATCCAGTTAAATTGGATGATAAAAATTACTGTATTCTGCTTAACAGAGTATTTAAGTAGCAGTAAtcataaaaatgtcttaaaatattgtgatgtaaTATTTTAACCGCATCACCCAGCTCTGTCACTGTGTGATTAGATATCTACAGTGCTAGTCAAATGTTTGTacacactttaaattaaaactatgaagaaaaaaatacagaattaattagtaaacaaaaaaagtgttaaacaaaccagaatatgttttatattttagattattcagaAAAAACGCAAGTTAGCAGCTCcctagataagagcacctaaatgcttcttcacagagtattatgggttgtttaacacttttaagttactacatgattccttatgtgttccttcatagtctggatcatctcactattcatttacaatgtaggaaaaaaaaatcaaaagatcatattgtaatattattttttggcCATATAATCCAGCACaagttgtgggtttgatacccaagttaggaaaaagtaaaaaataaaacctgccCTCACTGCTCCCCGGCTGCAGTAGGGATGGAACCAAAGAACCAAACCTTATTTACAGGTTATTTAACATCTGATATAAAATCAAAACCTAAAATCaccaaaaaatataagaatatataaaatgttaccaTTCTGGTTATTATATCAGCCttatatttatgctttattcttTTATATCATTGAAACAGAAACACATGTGAAAAAAAGCACACTTTTCATTAGTCTTACTTATTTTTTCATTGTTAAATATACCTATATTTATATCTCTTTTCCttgttattttctattctttccTCTACATACAGTTTCGACCGTATTTCTTGTTTAATCAGTTAATATGAGAAACTCATATGAGCTTCAGAGTTATATGAACGGGTAAAAATGTCATTAGAGGAATGTTTACCTTAGTCTCTTATGTTCTGCTTTCCTGATGATGTCACTGAAGGATGATCTAAAGGGAAGAATTGACTGATAAAGTCGTGCTGCTACATTCTGCTATTTTACTCCACCTGGCCTTATAGTCCCACATTCAGAATGGGTCACGTCTAATGGACGGATTGTTAATAAGCTTTACAGTAATATGTATGTGCCTCatgttttaaatatagctttaataCAGTTCTGCATATTGcaatttcttaaaaatataaaacgtgttttatctgatatttttatgctgacatgccaaaagtcttgGTCCAGTGCATCAATGTCTGGAGTAAAAATGGTATTAGGTag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177722 lncRNA upstream 158502 11784607 ~ 11793086 (+) True G131380
TU177706 lncRNA upstream 161331 11719732 ~ 11790257 (+) False G131367
TU177705 lncRNA upstream 161331 11789313 ~ 11790257 (+) True G131367
TU177711 lncRNA upstream 195856 11754565 ~ 11755732 (+) True G131370
TU177699 lncRNA upstream 271759 11676379 ~ 11679829 (+) True G131361
TU177922 lncRNA downstream 93012 12049346 ~ 12050371 (+) True G131531
TU177918 lncRNA downstream 130819 12087153 ~ 12090116 (+) True G131527
TU177999 lncRNA downstream 311788 12268122 ~ 12334090 (+) False LOC103031050
TU178022 lncRNA downstream 425281 12381615 ~ 12413992 (+) True G131595
TU178098 lncRNA downstream 631961 12588295 ~ 12592758 (+) True G131645
XM_022677194.1 mRNA upstream 42465 11806802 ~ 11909123 (+) True LOC103045529
XM_022677192.1 mRNA upstream 42465 11817480 ~ 11909123 (+) False LOC103045529
XM_022677195.1 mRNA upstream 42465 11847883 ~ 11909123 (+) False LOC103045529
XM_022677199.1 mRNA upstream 42465 11852272 ~ 11909123 (+) False LOC103045529
XM_022677197.1 mRNA upstream 42465 11862515 ~ 11909123 (+) False LOC103045529
XM_007241762.3 mRNA downstream 12447 11968781 ~ 11970846 (+) True LOC103036846
XM_007241763.2 mRNA downstream 35908 11992242 ~ 11994812 (+) True LOC103037687
XM_022677208.1 mRNA downstream 39772 11996106 ~ 12053107 (+) True LOC111194087
XM_022676717.1 mRNA downstream 112518 12068852 ~ 12086229 (+) True cbln4
XM_022676745.1 mRNA downstream 284362 12240696 ~ 12272814 (+) True LOC103031050
TU177643 other upstream 448865 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 2023574 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 2079816 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 2079997 9856406 ~ 9871591 (+) False LOC111194075
TU176928 other upstream 2194237 9756952 ~ 9757351 (+) True G130844
TU178139 other downstream 957157 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 3211674 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 3211674 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 3226016 15182350 ~ 15183567 (+) True LOC103024219
TU178729 other downstream 3283746 15240080 ~ 15240397 (+) True G132146

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU304189 False 1396 lncRNA 0.45 7 NC_053134.1 923959 ~ 1002466 (+)
striped catfish (Pangasianodon hypophthalmus) TU304189 False 1534 TUCP 0.38 4 NC_047610.1 18509155 ~ 18513257 (-)