RNA id: XM_022677192.1


Basic Information

Item Value
RNA id XM_022677192.1
length 3879
RNA type mRNA
GC content 0.56
exon number 22
gene id LOC103045529
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11806800 ~ 11909123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCATCCATGATCTCTATGATGAGAAGCCGACGCaggaggaggagtgtgtgtgtcagcatcCAGACTGCACTGAGCGCCGCCGCGCCTCAAAGgtgtgccATCATCCTGACTGTCAGGACCTGAACAACAAAAGCCCTCTTCACCTGTGTGAGTCATGTGACTCTCGCTGCCACCTGGACGAGACGGACAACATGCATTTTGACCGGCACCCTCGCTTTGACCTGCAGCCACAAGGTTCCATCCTGGCGCGGAATGTGTCCACACGCTCCTGCCCCCCGCGCACCAGCCCCCCTTCAGACCCTGATGAggaagagggaggaggagggggcaCTGAGCGAGGGGGACGTAAAGCAGGAGGGATGAAGCTGAGGCGGGACCGGAGGCGCTACACTGATGACCCAAGCAAGGAGTGCTTCACCCTCAAGTTTGACCTGAACGTGGATATAGACACAGAGATTGTTCCAGCGGTGAAGAAGAAGACGCTGAGAGAGGTACTGGGACCAGTGTTTGAGCGGAAAGGCATCGAGTTATCCCGAGTAGACCTGTTCCTGGACCAGTCCAACACTCCTCTCTCGCTCCAATTTGAGGCCTACCCCTTCGGAGGGCACTACATCAAAGTCAAAGctcgTCCGGGTGATGAGCTGAAGGTGGAGCAGGGAGTGAAGGACCTGCGCTCTCTCAGTCTTCCCAATATGAAGAATTCGAGCGGGGGCAGCCCGTACATCCTCGCCCCCACCAACGAGAAGGTGGAGCACACTTCCCTGACCCAGCGAGAGAGCGTGGACATACTGGGTCAAACACGTCGGACAAAAAACATGACCAAGTTCCTCGGTGATGAAAACATCCCGTCTCCAGACTCTCTGGCCGGGCTAGGGGGTTCTCTTCCCAGCCTCCCTCCTGGATTTGATAACCGCAAGAACCGCGCAGCCAGCCGCTTTAGTGGATTCTTCTTCCCCGGCTCTGGAAAGGAGGTGGACCGCGTGGAGCAGCTGAATAACAGGCTGCAGATGTACACGTTCCACGGCCTGCCCAAGGTCCCTCCCCAGCCCTCCTTCCACCACGACTcctgggaggaggaggaggacgagccCAACCTGACGCTGGAGGAGAGCTGGCAGAATCTGCTGGAGAATCCAGAGACTCTGAGCGAGCGCCAGTTGCATCAGCAGGAGGCGATATGGGAGCTGCTTCAGACTGAGGCCACGAACCTCAAGAAGCTCAGGGTTATCACTGATCTGTTCCTGTGTGGCCTGCTGAACCTACAGGACTGTGGGCTACTGGTTGAGGTGGAGCCGGCTAAACTCTTCAACAACATCCAGGACCTGGTCCGAGTGCACACGGCGCTGTGGAACCAGGTAATGCTGCCAGCACTAGAACGGGCACGCCGAGATCGGAGCCTGCTGGACCCAACTGACATGCACCTGGGCTTCCAAACGTTTTCATCACGGTTCGAGCCCTACCTGCGATACTGCATGGAAGAGGAGAGCTGTATGGAGTACATGCGCACACAACTGAGAGACAACGAGCTCTTTAAAATCTACATTACATGGGCTGAGGGCAACAAACAGTGCAACCGGCTGAAGCTGGCTGACATGCTGGCGAAGCCACACCAAAGACTGACCAAATACCCACTGCTGCTCAAAACCATCCTGAAGAAAACTGACGACAGTGCTGCCAAAGATGCTCTCCTCAATATGgtggtgtgtgtggagagcTTCATCAACAGCGTGGACTCTAAGATGCTGCAGAGGCAGGAGAAGCAGAAGCTGGCGGCGATTTCGGCTCGGGTAGAGAGCTACGAGGCAGTGGAGGGAAGCAGTGAGGAGGTTGAGAGGGCTCTGAGAGAGTTCAACCGCATTGACCTCACGGCTCCTATGATAGACACTTCTCCAGAGGAGACCAGACAGCTCCACCTGGAGGGGGCGCTGCGCATGAAAGAAGGAAAAGACAGCAGGATGGAGGTTTACTGCTTCCTCTTCACTGACCTCCTGCTCATCACCAAACCAGTGAAGCGCTTAGAGAAGGTCAAAGTGATCAGACAGCCTCTACTCATCCATAACATCGTCTGCAAGGAGCTCAAAGACCCGGGCTCTTTTGTCCTCATCTACCTCAATGAGTTCAAAAGTGCTGTGGCTGCGTATTCCTTCCAGGCCAACAGCACCTCCCAGGGGCGAAGCTGGGTAGATGCCATCTGCAATTTGCAGAACCAGCTCCAGCGTCTGCGCTCTGAGGAGGCTCGGCGGCGGCAGGCCAGACTGAAACAGAGACTGGAGGCTGCAGAGGAAGAtgagggaggagaggagagctGTAACTCCACTGCCAGCTCCCCACGACTCCCAAACAAGGAGCAGCGCAGTGCAGGAAACTCAGACGGCTCAACGGAGACTCTGTCTGTGGTAGAAATAGAGGATTCTGGGGCGAGCTCAGATGCCTCCGCGCTGCAGGCTGACCCCGGCGCCCCCCGCTATGAAGCCCCTTCTATTGTCCTCAGTAGCTCTGAACCCCAGCAGATCCCACCTGCTCCAGAGACCGACCCCCTGGACGGGTCAGAGCTGGACCCACAGTACCGCTCTCTCTCCATGGACAGCGCCTACGGCACCCTCTCGCCCGAGTCCCTGCTGGAGCTGCAGAGCCGGACGGCCACCAGCGAGGGGGACAGCACGGAGGAGGACGGAGAGGCAGACACTGAGGAGGAGGGAGGAAGCACAAAGGCAGAAGATGTGACCACAGCTGAGGAAGAGAATGAGGAAGaaagggaggaagaggaggaggaggaagaggaagagagctCGTTTGGCTCTCGGCTCTCAGTGGCTCACCGGTTAAAGCCCAGACGGAGACCCCCGGTCAACTTCCGTCTGCAGAGCCTGCAGAAACTGGAGTTCAAGTCCCATTCTGAGGACAACCTGCTGCAGCGCGTCCACGAGGAGAGCAAGCACAGTGCAGACCAGGCTCCCACGACTGATGTTTCAGACAACAGCAGAGTGTCCAAGATGGCCGAGGGTCTGGCTTACAGCAGAAGCCTGACTGAACTAATCACCACCAACACGTTGCCGTACCGGACGGGCAGAGAGAGAGCCGAAAGCCACCGGCTGACCTCCAGCCTGCCCGCCTCCGTCTTCACAGATACACTGAGACGCAACAAAGCACAGCTAGCCAAGAACAAGAAGAGCAAGAGGATTATGGGCCGCAGAGGCTCGGACGGAGAGGTGGGCCCGCCTAGATCGACGGAGGAGGAGGGACACAGCGAAAAGAAGTCTCAACAGCACAAGAAGCTCACACTCGCACAGCTGTACAGAATACGCACCACACTGGTACTCAACTCCACTCTCACAGCCTCGGAAGTCTAGACCCTGCCATTCCAGCAGCCACCAGCAGCGCCAGGTTCACCTGGCAGGACTGAATCCCTCGCCACATGAATGCACTCTAACCACTGAGGTGTCTCTCAGGCCTCTACGCTCCCTCCCTCTTCCGTGTGGAGTCGTCTTCCCTGCTCTGCTGAACCGCTTTGGgagaggctttttttttttttgcactttgtcAAACaagtagctttttttttcttgttgttgttgaaGAGGGAAAGCAAAGATTTAAGGGAACAATGGATCCTGACCAATAGGGGGAGCTTTACGGAAAGTAAACGAGGCAACAGTTTGAGCAGGTCTTTCCCACTTGGAGTTTGCCTAGGTAGGCAAGCTTGAAAGGATGAAAAACATCGTaaaaactgagtaaaaaaaaaagaagttgtcCTTAGAGCATGCAGTCCAACAATCCCTGAATGTCCACTGCCTGAGATTTGTTTAAGGAGAGCTGAAACAGACATTGAGCTGATGTACAGTTCAGTAAAGGGTTCAGTTcaatgtttaaagaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177722 lncRNA upstream 24394 11784607 ~ 11793086 (+) True G131380
TU177706 lncRNA upstream 27223 11719732 ~ 11790257 (+) False G131367
TU177705 lncRNA upstream 27223 11789313 ~ 11790257 (+) True G131367
TU177711 lncRNA upstream 61748 11754565 ~ 11755732 (+) True G131370
TU177699 lncRNA upstream 137651 11676379 ~ 11679829 (+) True G131361
TU177922 lncRNA downstream 140223 12049346 ~ 12050371 (+) True G131531
TU177918 lncRNA downstream 178030 12087153 ~ 12090116 (+) True G131527
TU177999 lncRNA downstream 358999 12268122 ~ 12334090 (+) False LOC103031050
TU178022 lncRNA downstream 472492 12381615 ~ 12413992 (+) True G131595
TU178098 lncRNA downstream 679172 12588295 ~ 12592758 (+) True G131645
XM_022677186.1 mRNA upstream 75450 11708353 ~ 11742030 (+) True LOC103033689
XM_022677160.1 mRNA upstream 151546 11651509 ~ 11665934 (+) True LOC103033368
XM_022676742.1 mRNA upstream 454129 11185748 ~ 11363351 (+) True LOC103032800
XM_022677144.1 mRNA upstream 689560 11115529 ~ 11127920 (+) True LOC103046525
XM_007238822.3 mRNA upstream 703516 11110370 ~ 11113964 (+) True fitm2
XM_022677202.1 mRNA downstream 13217 11922340 ~ 11978761 (+) False LOC111194085
XM_022677201.1 mRNA downstream 13217 11922340 ~ 11954647 (+) False LOC111194085
XM_022677203.1 mRNA downstream 13217 11922340 ~ 11954647 (+) False LOC111194085
XM_022677204.1 mRNA downstream 13217 11922340 ~ 11954647 (+) False LOC111194085
XM_022677205.1 mRNA downstream 16252 11925375 ~ 11954647 (+) False LOC111194085
TU177643 other upstream 314757 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 1889466 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 1945708 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 1945889 9856406 ~ 9871591 (+) False LOC111194075
TU176928 other upstream 2060129 9756952 ~ 9757351 (+) True G130844
TU177886 other downstream 42465 11951588 ~ 11956334 (+) True LOC111194085
TU178139 other downstream 1004368 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 3258885 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 3258885 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 3273227 15182350 ~ 15183567 (+) True LOC103024219

Expression Profile