RNA id: TU177706


Basic Information

Item Value
RNA id TU177706
length 329
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G131367
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11719732 ~ 11790257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaaaaaattaccccctgagaaactaatcctgtcctttttttggtccaaaccaCAATGGCAGGTGCCTCTACAGACAGTGATCCTGTCTTTATTGTACATTGATTAGCCACATACTAAAAAGTAACCCACATCCCTGCATGTTGATTCTGCTGTCTTCcaataattttaaaattctaTCATTGTAAATCAGTGTCTTGTGTTGTCTTGTTTCAACTTCAGCATCTTATGTGGCCGGCGCTTGAAAGTAGAGATGTTTGCGAAGGAAGTTGAAGGACCCAGGCATCTGTTTGTAGAGGCCTTTAGCGGATATCTGAGACACTTCATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177699 lncRNA upstream 39903 11676379 ~ 11679829 (+) True G131361
TU177694 lncRNA upstream 72627 11646460 ~ 11647105 (+) True G131357
TU177686 lncRNA upstream 84495 11634441 ~ 11635237 (+) False G131351
TU177688 lncRNA upstream 86123 11632509 ~ 11633609 (+) True G131351
TU177685 lncRNA upstream 88913 11630032 ~ 11630819 (+) True G131350
TU177922 lncRNA downstream 259089 12049346 ~ 12050371 (+) True G131531
TU177918 lncRNA downstream 296896 12087153 ~ 12090116 (+) True G131527
TU177999 lncRNA downstream 477865 12268122 ~ 12334090 (+) False LOC103031050
TU178022 lncRNA downstream 591358 12381615 ~ 12413992 (+) True G131595
TU178098 lncRNA downstream 798038 12588295 ~ 12592758 (+) True G131645
XM_022677160.1 mRNA upstream 53798 11651509 ~ 11665934 (+) True LOC103033368
XM_022676742.1 mRNA upstream 356381 11185748 ~ 11363351 (+) True LOC103032800
XM_022677144.1 mRNA upstream 591812 11115529 ~ 11127920 (+) True LOC103046525
XM_007238822.3 mRNA upstream 605768 11110370 ~ 11113964 (+) True fitm2
XM_022677175.1 mRNA upstream 730232 10969289 ~ 10989500 (+) True ada
XM_022677200.1 mRNA downstream 16543 11806800 ~ 11908203 (+) False LOC103045529
XM_022677194.1 mRNA downstream 16545 11806802 ~ 11909123 (+) True LOC103045529
XM_022677193.1 mRNA downstream 27140 11817397 ~ 11908203 (+) False LOC103045529
XM_022677192.1 mRNA downstream 27223 11817480 ~ 11909123 (+) False LOC103045529
XM_022677195.1 mRNA downstream 57626 11847883 ~ 11909123 (+) False LOC103045529
TU177643 other upstream 217009 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 1791718 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 1847960 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 1848141 9856406 ~ 9871591 (+) False LOC111194075
TU176928 other upstream 1962381 9756952 ~ 9757351 (+) True G130844
TU177886 other downstream 161331 11951588 ~ 11956334 (+) True LOC111194085
TU178139 other downstream 1123234 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 3377751 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 3377751 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 3392093 15182350 ~ 15183567 (+) True LOC103024219

Expression Profile