RNA id: TU177918


Basic Information

Item Value
RNA id TU177918
length 2199
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G131527
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 12087153 ~ 12090116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagtgggctggttcgaatcccgatcatgcagcttgccgccAGCTGCCGAAAgccccgagagagagagagagcacataattggccttgctctctttttgGGTGGGTACATGCTAACAGTAGATGCCGCTCTTTCCCTTTATCACTtatagggtgatgtggatcagcaaaaggatgcatctgtgagctgatgtattggtgCGCTTTCCTCCAATGCTGCATCATGTGttggagaaggcatgtgctagtcttcaccctccttgtgttgtgatatccatcacctgtgatgggggatatacagctgagtagcttttgaatgggtgggacaattgcatagcctagctaaattgggagaaacaAATAAATCTAAGCCAAAACTTTTAGTAGCAGTATATTATTGGTAACCATGGCAAGAGGAGGTTATACTACAGATATAATATAGTtgaaatattacatatatactaCTGTACTATACACCTACCAGCAGCATTTGTATTCTGTATTAGCATCTAAAAGGTTAGCTAACAGCAGGTCTGCTGTTTGGAAAGAAAGTTTGGGTGGAGGATCATGCCTCTAACCCTGCCTCTTGCCCTGCCTCTTATTGAAGACTTGATATATGGTACATAAGCTACAGGTAGATGGTATTTATAAGGTTATATATGTACCCTACATCAATGTAGGGACGTCTTCGCACCCCTACATTACCCCATCTCCTCCTTATAATTCTCGTCTTTCCTTCCCAAAAAATTAGCATTGGTCAAATCGCTAGCTCCTAGTTTCCACTCCTTATTAGCAGCAGTGACAAagcataaaacacagtggatcaacaccagcagatgttgcacatgtctctccataaaaccatcactgatcatcagtatattttactaaattgtatttgtaaatcaagggagcagaggctggaggaagagtggagagacacacagttgtccaaactgctcaaggtctagtgtgaacttcttgtgtattgctatcttggcaatagaaAACATAGATGCACCACTGATTAATAAATGAGCTGCTTGCGCACCCTTACAGTGtgtactgtgaaaaaaaaaaagagaccactcaaaaattatgggttttttcattttaacaaattaaaacctctggactgaactgcttaaagtttggaaccaggagtaaagcagcataaagttttacaaaagcataaaagtacctttactttgctaaaattctactcaagtaaaagtaaaagtacccatctaaaaatctactcgagtaaaagtaaaaaaagtactcaatttaaaatttactttgagtaaaagttagatagttacttttaattatttgatgtaaaaaagtaaaaacaaataataaattacatttttttattattccacatAAGTATAAAACTGTATaggtttctatcatccatttttttttctttactattaaaaagttatggtcatatatgtgactataaactgtaattttatagttttacagttttacccattgctctgctttaactgctatttacatgttttgaaagctgacagctctgtccggcggggcacattactttgtatttttttgcccccatcattttattttttactcagtaattgggagttttccaatgtagcaaagtaaattacttgtgtcaaaatgtatttgagtaaaagtaaaattacctattttaaaaaactactttaaaaacgacaaatctactcaattacagtaacttaagtaaatgtaattcattactttccagcTCTGTGTTTAGGTCTAGATAATATTGAATGCCTGCTCCTCTTGAATGGAGAGACGGTAATGTATCTGCCAGGCATCATAAAGATCTGCGGGGAGATGTTTAGCAGTTCTGACTGAGAATGAGGAGCTGAATGAAGTGCTTTGCTTCATTTACTATGATATTGATTTGTGGTCAGAGCTGATGGATCATAGAAAGGAATGATATCGAAGTTTTACCGTCCGTTTGGCAAAGCGTCAGGCTGTCTGTTGGAAAGCTGACAAATGGTCCTGAATGTTATATGAGCTGAAGACAGACTGAAGAACGACTAATAATAGTTCTCAGCCTGGAAAGCTCAAGTTCTGACCGGTGGGAgcgtgcactgaaaaaaatgatgcgtaaaaagAACTTTAACAATTTttcaactttctgcatttgctttttttttaagtaaatttaatttcaga

Function

GO:

id name namespace
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0030537 larval behavior biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177922 lncRNA upstream 36782 12049346 ~ 12050371 (+) True G131531
TU177722 lncRNA upstream 294067 11784607 ~ 11793086 (+) True G131380
TU177706 lncRNA upstream 296896 11719732 ~ 11790257 (+) False G131367
TU177705 lncRNA upstream 296896 11789313 ~ 11790257 (+) True G131367
TU177711 lncRNA upstream 331421 11754565 ~ 11755732 (+) True G131370
TU177999 lncRNA downstream 178006 12268122 ~ 12334090 (+) False LOC103031050
TU178022 lncRNA downstream 291499 12381615 ~ 12413992 (+) True G131595
TU178098 lncRNA downstream 498179 12588295 ~ 12592758 (+) True G131645
TU178107 lncRNA downstream 537616 12627732 ~ 12628616 (+) True G131652
TU178117 lncRNA downstream 599038 12689154 ~ 12763673 (+) False sall4
XM_022676717.1 mRNA upstream 924 12068852 ~ 12086229 (+) True cbln4
XM_022677208.1 mRNA upstream 34046 11996106 ~ 12053107 (+) True LOC111194087
XM_007241763.2 mRNA upstream 92341 11992242 ~ 11994812 (+) True LOC103037687
XM_007241762.3 mRNA upstream 116307 11968781 ~ 11970846 (+) True LOC103036846
XM_022677203.1 mRNA upstream 132506 11922340 ~ 11954647 (+) False LOC111194085
XM_022676745.1 mRNA downstream 150580 12240696 ~ 12272814 (+) True LOC103031050
XM_022677210.1 mRNA downstream 209918 12300034 ~ 12317378 (+) True znf217
XM_022677212.1 mRNA downstream 209918 12300034 ~ 12317378 (+) False znf217
XM_022677211.1 mRNA downstream 209957 12300073 ~ 12317378 (+) False znf217
XM_007258780.3 mRNA downstream 581511 12671627 ~ 12678080 (+) True zfp64
TU177886 other upstream 130819 11951588 ~ 11956334 (+) True LOC111194085
TU177643 other upstream 584430 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 2159139 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 2215381 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 2215562 9856406 ~ 9871591 (+) False LOC111194075
TU178139 other downstream 823375 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 3077892 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 3077892 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 3092234 15182350 ~ 15183567 (+) True LOC103024219
TU178729 other downstream 3149964 15240080 ~ 15240397 (+) True G132146

Expression Profile