RNA id: XM_022677212.1


Basic Information

Item Value
RNA id XM_022677212.1
length 3661
RNA type mRNA
GC content 0.52
exon number 5
gene id znf217
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 12300034 ~ 12317378 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATAGTTTGGAGCAGCGCACCACGTGACCAGAGGTGCCCTCTATGTGCGCGCGCCTCGGAACGCAACAGCTGCACAGTGAGGGAGAGATTCgcaaacactgagagagagagagcgcagcttttctcttttttgggcCAGCTCTGCTAACAATTGGCTAGCGCAGCCGCTAACCCAGAACACGACTTGATTTCCGAAGAACTTACGCGTGTGTTTAACTCGCTGTGTGATATGGCTCTGTGTCTGCTCTAATAGAGCGAGTGAATACCTGGCGAATAGTGAACATTATCGGTTCTGCCTGTCAGGACGTAATTCCGTTGTGTGAATCACGGGATATCTGAAGAGATTTCGAGTGTGCATGCCTACCAGCGGCAAGCCTGAACTGCTTTGTGTGCAGCTCGTCATGTTTTATTGTAGGGGTACGGTGAAGCTCTTTGAGGACCCGTTTTTTTGGAATTTCCTTTGAAAACCGCCTGTGTTTCCCCTGAAGAGTCGAGACGATTAGAAAActctttgttgatttttttttttgtctttcaacTACTTTTAGATGAGAGTGACTCATCTAAATAGATCCTATAGTTTCCTGCCCTTTTTTTTAAGCTGACGGGGTTTGATAAGGCCTGTCTTTTGTCATGCCAACCCACCCACTCATGCCGTATGTGGAAAGTCCTGATGGGCTAGGCCATGATATCCTGAACCACAGTAGTGCTACTATGCCTGGTTCTAGCTCGAGTATGACCCCCCACATCAGTTTAGCCGAGAAGACGGATGCTCAGATGGCGCAGACAGCAGGCAGCTTGCCACTGGACTGCATGTTCTGCGACCAGACCTTTCAGAATGAGGAAGAGCTTCGACCACACCTCTTTGCACAGCACCAGACAACGCTGCACGCCCCAGCTGTGCTCAGGGTAGAGGCTGAGTTCTTAACCCCAGGAGAAAGAGCCTGCTCCAAGTCCTGCCTGCCCACAGAGCCTGAGGAACAACTGGACTGCGTAGTGTGTGGTCAGGCCACTGAAAGTGCAGCTGAGCTGGAGGCTCACATGAGGAAGCACAAGGATTCCTTCATTTACAGCTGTAACATGTGTGGGCGACGCTTTAAAGAGCCCTGGTTCTTGAAGAATCACATGAGAACACATGGAAAATCAGGGGGTAGAAGTAAGAACCAGGACACGGAAGCACCGGTCACCATCAACGACGTCATCCAAGAACAACCGCAGTCAAATGCAGTCACCGCGTACAAAATGTGCATGGTGTGTGGATTTTTCTTCCTCAACAAAGAGGTGCTAGCCGAGCACAGTAAAGTGCACAGTCGAGAAGCAGAGCTGAGTGAGGAGAACGTCTCTGCAGAAAGCGAGCCTGCTGTGGAGTCCCACGACAGTGAGTCCCACGATAGTGAGTCCCACGCCTCCAAAGACGGCTTCCTGCAGTACCTCCAGCTGCGTCCCGCGTCCAGTCAAGAAAGCGCTGTGCAAAATCAAAGCCAATCAGGACGCTGGATCTCGCATCTCGACCCTTTCAACACCTACCAGGCCTGGCAGCTGGCCACTAAAGGCAAGATAGCTGTGGGCCCCAATCTGAACAAGGAGCTCAACATAGACTCCAACTCCGACAACGACGATTTCGGTTCCGACAAAGAAGAGCTCGGCTCTATCTGGGACTCCAGCAACGGAGACAAGCCGGTAAGGAGGGGCCTTAGAAACGAGCTGAAGCCCAAATTCAATGGCCGGGAGACGCCCTCGCCGTTGCCGGATCAGAAGAGTCTGATACGTAATAGTGgtcataataatattaataataacaagccCACAGACTGTGAGGAGTGTGGAAAGACTTTCAGAACCTACCATCAGCTGGTGCTTCACTCCAGAGTTCATAAGAAAGAAAGGGGAGGAGCGGAGAGCCCCACGACTCCTGTGGAAGGGAGGGCTCAGAGCGTGGGCTCGTCTGGCAGTCCGTCTCTGGACCGAGTGGAGGACGGCTCTGAGGACGGATTTGAAGAAGGAGTAGCTGGCGAGTCTTTTCATTCAGATAAAGGTGAAGATGGCTCGcataaaatgaaactgaaaattCTTGCTCCAAGGAAGTGTTGTTACTGTGGAAAAACCTTTCGTTCCAACTATTACCTCAATATTCATCTCAGGACACATACAGgtgaaAAGCCTTACAAATGTGATTACTGTGACTATGCTGCAGCTCAGAAAACCTCTCTAAGGTATCACCTGGACAGGCGTCACAAAGACAGGCCTTTTACTGAAATCCCCAACATCCCTACCAAGGGCCGAGAGTCTCCTAGAAACACTGATGACAAGCAAGCTTCTAAACCACCTAAACAGTGGCCTGCTCCAAGCCCCGCCTCTGCCGTCGTCAAACAGGAAGTAGGGCCCGGCCAGCCAGGCGTCATCACTACTGCCAGCTCTGTCATCCGTGTCAAAGAGGAGTGTGGGAATATGTCCACTACAGCTCTTTATACGCCTTCTCCTGGGGAGGCGCGTGTGAAATGCCTTCTGCCGAACAGCTTTAAGACTGAGAGTAAAGAGTCTGCAGATGCTGCACCGTTAAACCTTTCCTTTAAAGTGTCTTTATCCATCTCTGCTACCTCAGTGCCCAGGAACCTGCTCCCGACCAACTCCTGTAAGTCCTGCCCGTACGAAACCCTTTACCCTGAGGTTCTGCTCATGCACAAGAAGCTCATCCATAAGGAGAACTTGGACATGAAGAAGAATGGCTACAGGCCTCCCCTCAAGCTGAAACGGTACACTGGATGCCCTCCGGCTCTTGAGGGCAAAGATGTCAGTCCTTTACCTCACATCAACAGGAGACACCCTCGCCGGACcaaatcaccaccaccaccaccccaagCTGGAAGATCCGTGGAGAAAGTCCAGCCACAGAAACCTCCTCAGATATTGAAGGTGTCGCCTGCTAAAGAGCCAAGACGAGACCACCACCTGCAGGGAACCCAAAGAATCAAGCTTCCCGAAGGATCCATTGCATCCATTGCATCCATTCCGCCCAGGTTCCCGGATGTGGCGGTGGATCCCGGCAGAAAGTTAAACTCCCCCGCGGTCGTGGACAGAGGGACGTCCAATCAGAAGCCTGCGCCTTCTTCTAGAACAAGTGTGATCTGGCCGTCGGATGTGGCCAGGCTGTGTCTCTCAGACCGCTTCAGGAGCTTGACGCAAATGGATTATGGCGAGCCCTCCAGCAAGAGGCTAAAGCCCGCGGAGCCTCTCCAGGGCGCTGGAAGGATTGGGGATGAGTTCAGTCGACTCGTGCCCTCAGGCAGGAATGTGAAAAGCGTACTGCAAGGGAATCTACCCTTTGCTCCTGTCAGGGTGGCTCCGTCAGTGCCGAGCGgcggcagcggcagcagcgTCGAGGCAGACTGGAACGTCATCAACCTCCTGCGCTCCTACACTCCCAGCGACCTGGCCCCGCTCTACCAGCCTGTTGTGGCAGGCTCGGCTCACACTCCTGGGAATTCACCCAGCGCCGGTTTGAAATATTTGGATAGAATCACTGCACCAGCTCCAACCACGGGAAATACTACTGGAAGAAAGGTTTAATATATTGACGAACGAGACACAAGGACGTGCCCTTGATGCATGTTCACTCCTCCAGACACTACTTAactactataaaaaaacaacaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177918 lncRNA upstream 209918 12087153 ~ 12090116 (+) True G131527
TU177922 lncRNA upstream 249663 12049346 ~ 12050371 (+) True G131531
TU177722 lncRNA upstream 506948 11784607 ~ 11793086 (+) True G131380
TU177705 lncRNA upstream 509777 11789313 ~ 11790257 (+) True G131367
TU177711 lncRNA upstream 544302 11754565 ~ 11755732 (+) True G131370
TU178022 lncRNA downstream 64237 12381615 ~ 12413992 (+) True G131595
TU178098 lncRNA downstream 270917 12588295 ~ 12592758 (+) True G131645
TU178107 lncRNA downstream 310354 12627732 ~ 12628616 (+) True G131652
TU178117 lncRNA downstream 371776 12689154 ~ 12763673 (+) False sall4
TU178134 lncRNA downstream 581115 12898493 ~ 12900454 (+) True G131675
XM_022676745.1 mRNA upstream 27220 12240696 ~ 12272814 (+) True LOC103031050
XM_022676717.1 mRNA upstream 213805 12068852 ~ 12086229 (+) True cbln4
XM_022677208.1 mRNA upstream 246927 11996106 ~ 12053107 (+) True LOC111194087
XM_007241763.2 mRNA upstream 305222 11992242 ~ 11994812 (+) True LOC103037687
XM_007241762.3 mRNA upstream 329188 11968781 ~ 11970846 (+) True LOC103036846
XM_007258780.3 mRNA downstream 354249 12671627 ~ 12678080 (+) True zfp64
XM_007258781.3 mRNA downstream 437276 12754654 ~ 12763710 (+) True sall4
XM_022677214.1 mRNA downstream 447933 12765311 ~ 12823977 (+) True atp9a
XM_022677216.1 mRNA downstream 524825 12842203 ~ 12898436 (+) False nfatc2
XM_022677215.1 mRNA downstream 529742 12847120 ~ 12898436 (+) True nfatc2
TU177886 other upstream 343700 11951588 ~ 11956334 (+) True LOC111194085
TU177643 other upstream 797311 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 2372020 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 2428262 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 2428443 9856406 ~ 9871591 (+) False LOC111194075
TU178139 other downstream 596113 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 2850630 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 2850630 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 2864972 15182350 ~ 15183567 (+) True LOC103024219
TU178729 other downstream 2922702 15240080 ~ 15240397 (+) True G132146

Expression Profile