LOC111194087 (LOC108275500,LOC108425482)


Basic Information

Item Value
gene id LOC111194087
gene name LOC108275500,LOC108425482
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11996106 ~ 12053107 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677208.1
ccaCTGGCTCTTCTTTAGCGCTGTGCGTTTTTAACTGCTTTTACGTTTTTAACTGGGTCCCTTTTTTTCAGACGGTCCCTTGCGATCTTCAGCGCCTCCTGCTGCAGTGATTCCGtctattttcattaaatgttttggGAGAAAGGGAAAGTCAGGACTTTTGGGCAGATATAATGTGTatagtttgttttcttttcctctGTAGTTTGGAAAATGTAGTTTGGAAGAGTTTATGACGTTGTTTGTGAGCAAGAGAAGGGATAAAAAGCATAAATAAGTAGAATTTAGAGTAAAAACCAGCTGAGCAGCTCGTCTTTCTGCCGGAGTGACGTATTGTTTgcgcagacagacagacagacagacagcagcagtgtgtacACCTTGATTCCTCAGCTCCGGAGCTCAGTTTGAGGAAGTTCTCTACAGCTGAAGGCTGTGTTTCTACTTTTCCCTGATGCCACAGACCTTCAAACGAATGGAGGGCAAGACGGGGGTGCCCTTACCTCAGCTCAGCAATGAGATGCAGCTGGATATTATGCACAAGGTGAAGAACGGGGAGCTGAGTATCGATGATGCTCTGGACTTGGCCAGGAGGGACCGTCAGCAGCTGCTGCAGAAAAGTTTCGATACCGAGGAAAAGCAAGCCTTGCAGTACAACTTCAGCGTGCACAAATTAGGCGGCTACAGATGGCAAAAACGTGTATTGCAGATCGACTTCAACACGAAGATGATGTGCAGCATCGAAAGAGGCATTGTGAAGAGGCAGTTTCCTTTCACAGAGGTGAAAAACTGCCACGACGCCTCCGGGTCCAAGTTCACCGTGTCATTCAAGGGCCACCATGACTACGAGCTGGAGGCCATGTCCCCACAGGACAAGCAGAAGATTATGGAACTGATACATCAGATCATCTACAGGAACATCCATCCTGTAGACACACTTGAGGAGCCCAGCAAGCCACCAGCCTCCCCCACACAGCTTCACGAGGGACAGCTATTACTGCAGAGGGGAGGCCTAGCATCATGCAAATGGAAAATgtATGATGCTCACCTGTACACAGGCCAGCTGACCCTGCTGCCGATTGGCTATCGGCCGGCCTCCAATGACACGGATGTGCCGTTCACTCCCAGCCAGCCGCTCGTCATTCACCTATCAGACGGAAATGCGAGTGTAGAGACCCTTCGGTCCAGTGACACCTTCATACTGCTCACCAACCAGAACGAGTTCCATTTCCGGGTTCCCATGGGtgagcagatgaacacagaggACACCAGGAGTGAGCGGGACACCTGGGTCAAAGCCATCGACAAGCAGTGCGTGGACTGGAAGCGCAAATCCCAGTATGAAAACATACACAAAGAAGACCTTCACAGCGGACATATGGTACCAGTGATGTTACCCCAGAACCTCTTCAAACCCCTGCCAGCTCCAgttccttttccttttcctgAAGCAGCTTTAGCACTAAAACCATCGCCTGATTTCAAGCCACAGCCAAGACCAAGAAAAAAACCCCAGGTCTTTTCATCAGAGAGCAGATCAGAACCAGCACCACAGCTGAAGCAGAGTCAGTCTCCAACATCTCCTCCAGCCCTGGTCCCTCCACCTCCTTTACCACCTCCACTACccatgaagaagaaaaaatcccAATTAATGAGGACCAAGGCGTTTCACTGGGATCTCCTGTCTAAAGAGAAGATTGTGAAGTCAGTCTGGGCGCGGGGAAGCCCTCGAGAAATTGAAATCGACACCAAGCGTTTGTGCGAGCAATTTGGAGTCAAAGACTCGGGCCACTTTTCTAACTCGGAGTCAAGCAATCATGTTGAAATCATGCTGAGTGTGAAAATTGCACACAACTTCAATATTTTCCTCAAAAGTTTTCCAGTGCAGCCAAAAGAACTCAAGGACAAATTGTTCATTGTTAATGAGGGAGATGGAGGCCTCTCCGATGAACACATCACATCCCTCCGGAGgtatGTGCCGACGGCTGATGACATAGAGATGTATAAGTCCTATAAAGGAGACGTGAATGAACTGCACATCGTTGATCAATACATGATGGAGCTGTGTAATATCCCGTACCTGAGCACCCAGCTGGACCTGCTGCTGACCCTCAGAGAACTGCCCATCAGCATGGACGATCTGAAACCGCTGATTAGCCAGAAGATCCACATGTGCCAGCAGCTGTGGGGCTGTGAAGCGTTCGTCTGCGTGCTGGAGTACCTCCTGACCATCGGCAATTACCTCAACCAGCACGCCGGCAAGGAAAAGGCCAAGGGATTCCGCCTCTCATCTCTAACTAAGCTCATGCAACTGCGTGGGAACGAGAGGAAGTTCACCTTGATGCACGCCCTTGTGGAGCAGATCATGTTGCACGAGCCCCGTTTGGCCACTTTTTTCCGGGAGCTGGCGGAATTCGAGACCGTCCCAGGGGCTTCAATTAAAGGCCTAACAGCTGAAGTGGATGTTTTGAAGAATGAGCTACAGAAGGTCATTCAGTACAGGAAAACGTACAAGGGGAAAAACCTGGGCAGCCAGCACACAAAATTCACCAAGGATCTGAAGGCGTCCATCGAGAAGTACGAGGCCGATCTGAACCACCTGACGAAGAGGTGCGACGAGATGAGGAAACTCTACACTGACATATTGGTGAAATTCGGCGAGCCGTTGAATCAGGATTCTCAGGAAGTGTTTGGCTGGGTGTGCCAGTTCATCAACGAATTCAAAAGGATTCATTCAGAGCTGACACGCTGAGAAATTCACCCACCTGcacacaaatatatgtatatatatatatatgtatataaatatatatatacaaaaaaaata

Function

NR:

description
PREDICTED: formin-like protein 13 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677208.1 True 2827 mRNA 0.49 17 11996106 12053107

Neighbor

gene id symbol gene type direction distance location
LOC103037687 NA coding upstream 1294 11992242 ~ 11994812 (+)
LOC103036846 LOC103036846,LOC108425493 coding upstream 25260 11968781 ~ 11970846 (+)
LOC103045529 LOC108425554 coding upstream 86983 11806800 ~ 11909123 (+)
LOC103033689 avpr2,LOC106567019 coding upstream 254076 11708353 ~ 11742030 (+)
LOC103033368 LOC108425561,LOC108276129,LOC107593912,LOC107673097,LOC107737522,LOC107591068,LOC107716150 coding upstream 330172 11651509 ~ 11665934 (+)
cbln4 cbln4,LOC106567122 coding downstream 15745 12068852 ~ 12086229 (+)
znf217 NA coding downstream 246927 12300034 ~ 12317378 (+)
zfp64 NA coding downstream 618520 12671627 ~ 12678080 (+)
atp9a atp9a,LOC106567116 coding downstream 712204 12765311 ~ 12823977 (+)
nfatc2 nfatc2 coding downstream 789096 12842203 ~ 12898436 (+)
G131380 NA non-coding upstream 203020 11784607 ~ 11793086 (+)
G131367 NA non-coding upstream 205849 11719732 ~ 11790257 (+)
G131370 NA non-coding upstream 240374 11754565 ~ 11755732 (+)
G131361 NA non-coding upstream 316277 11676379 ~ 11679829 (+)
G131357 NA non-coding upstream 349001 11646460 ~ 11647105 (+)
G131527 NA non-coding downstream 34046 12087153 ~ 12090116 (+)
G131595 NA non-coding downstream 328508 12381615 ~ 12413992 (+)
G131645 NA non-coding downstream 535188 12588295 ~ 12592758 (+)
G131652 NA non-coding downstream 574625 12627732 ~ 12628616 (+)
G131675 NA non-coding downstream 845386 12898493 ~ 12900454 (+)
LOC111194085 LOC108425553 other upstream 17345 11922340 ~ 11978761 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 493383 11491563 ~ 11502723 (+)
LOC107197146 NA other upstream 1166548 10815860 ~ 10829558 (+)
LOC103038829 NA other upstream 2067873 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 2075111 9911307 ~ 9920995 (+)
LOC103031050 NA other downstream 187589 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 636047 12689154 ~ 12763710 (+)
G131677 NA other downstream 860384 12913491 ~ 12940847 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 3114901 15168008 ~ 15172897 (+)
G132146 LOC106581475 other downstream 3186973 15240080 ~ 15240397 (+)

Expression


Co-expression Network