RNA id: XM_022677204.1


Basic Information

Item Value
RNA id XM_022677204.1
length 2085
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC111194085
representative False

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11922340 ~ 11978761 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttaaactggAGGAGGATCTCTGGCCGGATTTGGGTGGAGTGAACTTGGACAACCActggactttagctttttttatttagcttttcaGCTCTTTAGCAGCTTTACCAAAGACTGTGTACAGTTTCTGTGAGAAAAcccagttttatatatttattaacagaGTGTGTTTAGTTCAGAGAGACCCTCACCCATGCcgcagcagcagtgtgtcagACAGACATGGGGGATGTGAGTGAAGCGTCTCTGCTGGATTACATCTACCGCTCTGGAGGGAAAGTCAGGAATTCAGAGCTCTTAAAGACTTATAAGCAGTTTATTAGCCACAGTGATCTGCAGCTGCGGGCCAAATACAGGGAGGAGTTCAAGCTCATCATCGACAGGATAGCGGTGTGCAAATCCGAGAATGGGGAGAAGTATCTGATCCTGAAGAAGAAGTACAGGCAGTTGATGCAGGAGCGCGAGTGTGAAGCAGGAGCTCGAGAAAACCCAGAGATCAAGAGtattagcagtattagcagCTCTCACACAGAGCTCCAGAGCTCAGCTTTGGAACAGCAGCAGAATCTCAGTCTGATGGAGGTAGAAGAGAGGAGGAAGCCAGCTCAGGTCTCGTGGTGTGGTCCCACCATTACAGTCACTGAAGCCAAAGAGAAGGAGCATATAGAAGATGAACAAGTGACTGACAGCTGCCCCTCACTTTCGGCCCCCGTGGAGATCCGGGACCCCCTGCCAGAGGAGCATCCTGAACCCACAGATGGAGAGGATGATCTGGACAAGGACTCAGGGTCAAAGtcTGAATCAGAGCAGGATGAAGAATGTACGGGTAGTGTTGGCTCTAATTCCGTGGCTCTGGATCCTTTAGAGAAGGAGTGGATCTATTCTGCAGCCTGCGGCAGACTGTCCCACCTCACCCAGCTGCTCAAGCAGGACGCCTCCCTCGCCAACAAAAAAGATTTTACCTCAaCGGCTCTCCATTGGGCGGCTAAGCATGGAAAAGAAGACATGGCGGTTGCCATGGTTGACGCTGGAGCTGATGTCAACACCAAAGCTcacGGAgGATACACACCTTTACATATTGCTGCACTTCACGGCCACCGCCATATAATTGATATACTCATCACAACGTACGGAGCGAAGGAGAATCTGCGAGACTACAGCGGACACTTACCGTCTCATTACCTGAACATACAAAAGACGACGGCGGAGGAGAGCAGTGAGATCACTCCAGGGTATCACAGCCCGGCGCAGGTGAGCGAGCGACGGAACAGGAAGATAACGTCTCTCTTTCAGTCCCGGAAAAAGTGGGGATCTGCAGAAGACCTGGCGCCCGTCCCGGAGGAGAGGACAGCGCCCCATCAGCTCATGATCCCTGCCTTCAGACCCAGGAAGTTCTCCCGCTGAACCGCCATCATAACTGGTACTTATTAGATCAGTTTGTTTGGgacagtattaaaaaacagagattGAAGTGCagaattttattgttttttcattgttatttcatattttagtttcttttaaGAAGCTCATACTGGAGGTTTGTTACGATCTTGTTCTGTGTTCAGTTATAAACCTCAGATTAGACATTAGGCTAATGTATCACATTTACAATACATTAAGctgttatatttattatgtggcaaatattaatacataattGGATAACTTTCACtatttggacaaaagtattttattcattgtttaacACTGAGTTTTTACTGTCATTCAATTTGTGTGCAGTTACATTCCTCCAAAACCATTGAGCAACATAGAACAAAAccaattgttattattttactctttattattttatattattgcaAGGCATTAGGCATGGCACCAGTAGGTTTATGTGTCTCTGCTAAagggagtcctattctattggcaatacattGACTAGACAAGCTAGGCAAgctgtgtgcatgtgcacaGCTGTATCAGCAATAGGGCAGCTGGGCAATATGAACCATATTTTATCGGATCGCGATACATTTTTCTATTGAATTGacaatactagtgcatctcaaaaattttgcctatcattaaaaagttactttcttttggtaattcagttaaaaatgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177722 lncRNA upstream 129254 11784607 ~ 11793086 (+) True G131380
TU177706 lncRNA upstream 132083 11719732 ~ 11790257 (+) False G131367
TU177705 lncRNA upstream 132083 11789313 ~ 11790257 (+) True G131367
TU177711 lncRNA upstream 166608 11754565 ~ 11755732 (+) True G131370
TU177699 lncRNA upstream 242511 11676379 ~ 11679829 (+) True G131361
TU177922 lncRNA downstream 94699 12049346 ~ 12050371 (+) True G131531
TU177918 lncRNA downstream 132506 12087153 ~ 12090116 (+) True G131527
TU177999 lncRNA downstream 313475 12268122 ~ 12334090 (+) False LOC103031050
TU178022 lncRNA downstream 426968 12381615 ~ 12413992 (+) True G131595
TU178098 lncRNA downstream 633648 12588295 ~ 12592758 (+) True G131645
XM_022677195.1 mRNA upstream 13217 11847883 ~ 11909123 (+) False LOC103045529
XM_007241762.3 mRNA downstream 14134 11968781 ~ 11970846 (+) True LOC103036846
XM_007241763.2 mRNA downstream 37595 11992242 ~ 11994812 (+) True LOC103037687
XM_022677208.1 mRNA downstream 41459 11996106 ~ 12053107 (+) True LOC111194087
XM_022676717.1 mRNA downstream 114205 12068852 ~ 12086229 (+) True cbln4
XM_022676745.1 mRNA downstream 286049 12240696 ~ 12272814 (+) True LOC103031050
TU177643 other upstream 419617 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 1994326 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 2050568 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 2050749 9856406 ~ 9871591 (+) False LOC111194075
TU176928 other upstream 2164989 9756952 ~ 9757351 (+) True G130844
TU178139 other downstream 958844 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 3213361 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 3213361 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 3227703 15182350 ~ 15183567 (+) True LOC103024219
TU178729 other downstream 3285433 15240080 ~ 15240397 (+) True G132146

Expression Profile