LOC111194082


Basic Information

Item Value
gene id LOC111194082
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11514191 ~ 11516304 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650884.1
CGGATGATCCAGACTGCCCATGGACAGCATGTGCTGCGTACGggaggagagagggaaaaagctGATATAAGTGACAGTAACACATGTGCCAAAGACTCCTGATCCCAGAAGCTTTCCCTTGCGCAGTTCTGAAGCTCTCAGAATCCGAGCGTGGACCTTCGTCCCCTTCTCACCTGGATCCAGCGGCTCGATGCTCTGTGGGAGAATCAGAGtTCCTGTTTACTGCAACTGCACAGCTTCAAAAGTATGTGGACACCTGACCATCTCACTTATGTGAGGCAACAATAGGCATTCATATGAAAATGCATTTACTTTGTGTCTGACCACTTCATATATTCCATTATAAATATTAGAATATGGGAATTTGTACCCATTTAGTGAAATTGGAATCGGTTAGGCACTGATGCTGAATAAGAAGACCTGGCTTGTAAAATAAGGTCAGGGTAactattttcataattttcatatAATCATTTTTTATGACCGGCTTGTGTATTTAGGTAAATCGTGAAAATTGTGCCCCTCAGAgttattaattgtatttactGTCTACTATTTGTTTTGCCAAAGATCTTTGTGAGTTGGACATTTTAAGG

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0048882 lateral line development biological_process
GO:0031101 fin regeneration biological_process
GO:0014044 Schwann cell development biological_process
GO:0048914 myelination of anterior lateral line nerve axons biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0048066 developmental pigmentation biological_process
GO:0007413 axonal fasciculation biological_process
GO:0008347 glial cell migration biological_process
GO:0001964 startle response biological_process
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650884.1 True 596 lncRNA 0.41 3 11514191 11516304

Neighbor

gene id symbol gene type direction distance location
LOC103032800 lrp1,LOC108425568,LOC107593902,LOC107673053 coding upstream 150840 11185748 ~ 11363351 (+)
LOC103046525 LOC108425571 coding upstream 386271 11115529 ~ 11127920 (+)
fitm2 NA coding upstream 400227 11110370 ~ 11113964 (+)
ada ada coding upstream 524691 10969289 ~ 10989500 (+)
LOC103044697 gdi1,LOC108276388,LOC108425579,LOC107564645 coding upstream 627105 10874498 ~ 10887086 (+)
LOC103033368 LOC108425561,LOC108276129,LOC107593912,LOC107673097,LOC107737522,LOC107591068,LOC107716150 coding downstream 135205 11651509 ~ 11665934 (+)
LOC103033689 avpr2,LOC106567019 coding downstream 192049 11708353 ~ 11742030 (+)
LOC103045529 LOC108425554 coding downstream 290496 11806800 ~ 11909123 (+)
LOC103036846 LOC103036846,LOC108425493 coding downstream 452477 11968781 ~ 11970846 (+)
LOC103037687 NA coding downstream 475938 11992242 ~ 11994812 (+)
G131315 NA non-coding upstream 5253 11505329 ~ 11508938 (+)
G131299 NA non-coding upstream 28545 11435797 ~ 11485646 (+)
G131086 NA non-coding upstream 438677 11074489 ~ 11075514 (+)
G131099 NA non-coding upstream 444981 11061853 ~ 11069210 (+)
G131094 NA non-coding upstream 467331 11040923 ~ 11046860 (+)
G131325 NA non-coding downstream 18753 11535057 ~ 11589420 (+)
G131329 NA non-coding downstream 36609 11552913 ~ 11555625 (+)
G131340 NA non-coding downstream 59089 11575393 ~ 11578282 (+)
G131350 NA non-coding downstream 113728 11630032 ~ 11630819 (+)
G131351 NA non-coding downstream 116205 11632509 ~ 11635237 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other upstream 11468 11491563 ~ 11502723 (+)
LOC107197146 NA other upstream 684633 10815860 ~ 10829558 (+)
LOC103038829 NA other upstream 1585958 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 1593196 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 1642419 9856406 ~ 9871772 (+)
LOC111194085 LOC108425553 other downstream 406036 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 724392 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 1172850 12689154 ~ 12763710 (+)
G131677 NA other downstream 1397187 12913491 ~ 12940847 (+)
G132109 szrd1,ca144,LOC103023907,LOC107687433,LOC107716129,LOC107673108,LOC107737539 other downstream 3651704 15168008 ~ 15172897 (+)

Expression


Co-expression Network