G131299


Basic Information

Item Value
gene id G131299
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 11435797 ~ 11485646 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU177624
gtcaaaagcttttttttaagggATGAGGTTAAGACCCAAACATAACAGGGATGGCAGCAATTATTGGACATGTTCAATGATCAAATTCCCAGTatctaaatgcaataaaaagtgtatgaaataTTCAACCATGCATCGCTGCAGCCATAAAAAAAAGCCACCCCAAAGAAGACtatataaaatgaacaaaaagtactttaaagtgaaggttaacACTCCTCTGTATCAGGAAGTGTGTTCAGtgagttttttaatgtattgttaAACAGAATTTGCAGAAAGAACTGGTGTGTTTTCCTTACAAATGTAGTAATCCCTTAAACTGAACAGTTGATATGAAATCTAGGAGCATGCCCTGTACAACCTCAGGGTTACCAGTAGTTATTTTACTGGTTGAGACCTCCCTTTTCGCTCCACAATCCAGTACCCATCTATTACCAACATAATTCTAGAACAGACCTCTCAAAGCACTTAACTAAATGACCTTGGCCTCCACCCACCCAATGCTTCCTCAAGAGAGCTCATGAAGCTTAGTGTTCTTGATGGATCTCTGCTCAAATAAACTGTAGTTTCCAATTCATTCAGTGCCACACATGAATAcgtttttaaaacagattttattggAGGTATTAACAAAAACATGCTGAGCTGGAGTTGTCTGGAATGTCCAAAGAGAGTTCGCAAGGCCATCAAAACCCAAGAGGCAACTGAGCAGCCAGGTGATGAAGATCCCACTGTCAGAAGTGTCTGGCTTCATTCAGGGTAGATGAAGGGAACCTCTTCAGTCGCTCTTTGCAAGACTCTTGCTGAGGGAAAATCCGAGATGATCAGGATGGAATCCAGCTGCAGCAGACAGGGTGCAGTTTACTTAGACCTCTGCCTCATCTTTCTCCTTTTACGCTTCAGCCTGCGCATACGCTTCTTTCTCCACTTCGCTCTCATGTTGGAAGCGTTCCTCCACAAGCGAAGCAACGA
>TU177626
ttttttttttttttttTAcgtttttaaaacagattttattggAGGTATTAACAAAAACATGCTGAGCTGGAGTTGTCTGGAATGTCCAAAGAGAGTTCGCAAGGCCATCAAAACCCAAGAGGCAACTGAGCAGCCAGGTGATGAAGATCCCACTGTCAGAAGTGTCTGGCTTCATTCAGGGTAGATGAAGGGAACCTCTTCAGTCGCTCTTTGCAAGACTCTTGCTGAGGGAAAATCCGAGATGATCAGGATGGAATCCAGCTGCAGCAGACAGGGTGCAGTTTACTTAGACCTCTGCCTCATCTTTCTCCTTTTACGCTTCAGCCTGCGCATACGCTTCTTTCTCCACTGAAAGGAAAAGACACACATGTTATGACATACATGGATGTACAGCATACATTCTATACAGACAAGTCAAATTGCCATCAAAATGAAGCAactgtttttaaagtattataaAGGACTCAATAAGGCCAGGCAAACAGTTCCCTTGTATGCAAACATTTGAATACTATGCATGTTCTATTTTCTATGCCCTCCCTCCACTTTACATTTTATGCATGTGGTGAGCAATGGAACACAAACAAGTTGTGCAATGAAACAAGGCCTAAATCTTCAAGCCAGCTAGTTAACCTTGCTAAACTACACTTTTGGCAATGTTATGGTGCAGTAAGATGTGGAGTATTCCCTTTAACAGGAGTCTTTAGCTATGCTCCTGAATAGAGACTCTGCAGCAGAATTTAGCACCAACCACCAATCAATACTGCTCAAGCAATCTCATTATACACATGTAGAAGAGCTTGGTCagttaaaatgagctaaaagTGGAATGGAGTACTGGACAATTTAGTGATTTCCTGCACCACCATCTACTCTGGAAAAACATTGTCCAAAaactaaagtaaattaaaagggaaacaaaTCTCAAACTACAGTCAGCTTGTTACATTAACTACAGTCAGAGCATGTGCAGGTCTCAAAGTCCAACTGCTGCATGATTTACAGCAAGATTTGTTACAAGAGgcacaaattaataaattaacacttTCAGACCTTGCATCAATTACAATAGACATCATGTGCTTTGTTtccaaatgttttgttttttacgaCAATAATTAAAACCTGGTGTCCATCAGAATAAATCAAACAAGCCAAAGAAACAGTGGCTTAACCTCACCCACTGGactagaaaataaaaattagctcatttttatacattttaattaaccaTCATGTATTAGAATACAAATTTGGTAATATGATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177624 False 975 lncRNA 0.42 4 11482477 11485646
TU177626 True 1268 lncRNA 0.38 4 11435797 11484627

Neighbor

gene id symbol gene type direction distance location
LOC103032800 lrp1,LOC108425568,LOC107593902,LOC107673053 coding upstream 72446 11185748 ~ 11363351 (+)
LOC103046525 LOC108425571 coding upstream 307877 11115529 ~ 11127920 (+)
fitm2 NA coding upstream 321833 11110370 ~ 11113964 (+)
ada ada coding upstream 446297 10969289 ~ 10989500 (+)
LOC103044697 gdi1,LOC108276388,LOC108425579,LOC107564645 coding upstream 548711 10874498 ~ 10887086 (+)
LOC103033368 LOC108425561,LOC108276129,LOC107593912,LOC107673097,LOC107737522,LOC107591068,LOC107716150 coding downstream 165863 11651509 ~ 11665934 (+)
LOC103033689 avpr2,LOC106567019 coding downstream 222707 11708353 ~ 11742030 (+)
LOC103045529 LOC108425554 coding downstream 321154 11806800 ~ 11909123 (+)
LOC103036846 LOC103036846,LOC108425493 coding downstream 483135 11968781 ~ 11970846 (+)
LOC103037687 NA coding downstream 506596 11992242 ~ 11994812 (+)
G131086 NA non-coding upstream 360283 11074489 ~ 11075514 (+)
G131099 NA non-coding upstream 366587 11061853 ~ 11069210 (+)
G131094 NA non-coding upstream 388937 11040923 ~ 11046860 (+)
G131088 NA non-coding upstream 407821 10995674 ~ 11027976 (+)
G131085 NA non-coding upstream 441651 10991903 ~ 10994146 (+)
G131315 NA non-coding downstream 19683 11505329 ~ 11508938 (+)
LOC111194082 NA non-coding downstream 28545 11514191 ~ 11516304 (+)
G131325 NA non-coding downstream 49411 11535057 ~ 11589420 (+)
G131329 NA non-coding downstream 67267 11552913 ~ 11555625 (+)
G131340 NA non-coding downstream 89747 11575393 ~ 11578282 (+)
LOC107197146 NA other upstream 606239 10815860 ~ 10829558 (+)
LOC103038829 NA other upstream 1507564 9922981 ~ 9928233 (+)
mlh3 mlh3,LOC107591079 other upstream 1514802 9911307 ~ 9920995 (+)
LOC111194075 tuba1b,LOC107697946,LOC103148207,LOC105941124,LOC107707017,LOC107715008,LOC107557552 other upstream 1564025 9856406 ~ 9871772 (+)
G130844 NA other upstream 1678446 9756952 ~ 9757351 (+)
G131313 LOC107737517,LOC107716155,LOC107593906,LOC107668344,LOC107591063 other downstream 5917 11491563 ~ 11502723 (+)
LOC111194085 LOC108425553 other downstream 436694 11922340 ~ 11978761 (+)
LOC103031050 NA other downstream 755050 12240696 ~ 12334090 (+)
sall4 sall4 other downstream 1203508 12689154 ~ 12763710 (+)
G131677 NA other downstream 1427845 12913491 ~ 12940847 (+)

Expression


Co-expression Network